Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P21120_001 | |
| GSMUA_Achr3P21890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60630.1 | GSMUA_Achr3P21890_001 | AT1G72030.1 | 21798944 |
| AT4G00150.1 | GSMUA_Achr1P21120_001 | AT1G60490.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 64.6 | 75.13 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 59.83 | 74.73 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 61.71 | 64.02 |
| Zm00001d022034_P001 | Maize | cytosol | 22.98 | 51.96 |
| Os10t0551200-01 | Rice | cytosol | 27.89 | 48.49 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 33.38 | 48.43 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 36.13 | 47.35 |
| Zm00001d047957_P001 | Maize | cytosol | 7.95 | 42.64 |
| VIT_02s0154g00400.t01 | Wine grape | cytosol | 30.78 | 41.6 |
| Zm00001d027292_P001 | Maize | peroxisome | 28.03 | 40.33 |
| Os04t0555000-01 | Rice | cytosol | 41.33 | 40.23 |
| Zm00001d002718_P001 | Maize | cytosol | 41.76 | 40.08 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 41.62 | 40.0 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 40.75 | 39.89 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 40.46 | 39.77 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 40.17 | 39.71 |
| Os02t0662700-01 | Rice | cytosol | 40.61 | 39.63 |
| Os02t0663100-01 | Rice | cytosol | 40.9 | 39.58 |
| HORVU1Hr1G053510.1 | Barley | plastid | 35.4 | 39.52 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 31.79 | 39.43 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 39.88 | 39.26 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 16.18 | 39.16 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 35.12 | 39.13 |
| Os06t0105350-00 | Rice | plastid | 27.6 | 39.06 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 35.26 | 39.04 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 35.12 | 38.94 |
| Solyc08g078800.1.1 | Tomato | plastid | 26.59 | 38.82 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 39.45 | 38.67 |
| Zm00001d045589_P001 | Maize | cytosol | 27.89 | 38.6 |
| Zm00001d026158_P001 | Maize | cytosol | 40.03 | 38.58 |
| EES05768 | Sorghum | cytosol | 39.74 | 38.41 |
| Zm00001d051387_P001 | Maize | cytosol | 39.02 | 38.14 |
| EER91968 | Sorghum | cytosol, mitochondrion | 35.26 | 38.12 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 34.97 | 37.99 |
| Os03t0103400-01 | Rice | cytosol | 26.01 | 37.97 |
| TraesCS7D01G011400.1 | Wheat | plastid | 29.19 | 37.97 |
| CDY63061 | Canola | cytosol, plastid | 30.78 | 37.9 |
| CDY63062 | Canola | cytosol, plastid | 30.78 | 37.9 |
| Bra037319.1-P | Field mustard | cytosol, plastid | 30.78 | 37.9 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 34.97 | 37.69 |
| EER87695 | Sorghum | cytosol, plastid | 27.89 | 37.62 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 34.68 | 37.38 |
| Zm00001d029855_P001 | Maize | mitochondrion | 34.68 | 37.21 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 34.25 | 37.15 |
| TraesCS4A01G482000.1 | Wheat | plastid | 28.61 | 36.46 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 40.46 | 36.13 |
| Zm00001d022162_P001 | Maize | cytosol | 8.53 | 35.76 |
| Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 9.39 | 35.71 |
| Zm00001d018956_P001 | Maize | plastid | 7.23 | 34.97 |
| TraesCS7A01G014200.1 | Wheat | plastid | 29.34 | 34.94 |
| CDX95633 | Canola | cytosol | 27.75 | 34.66 |
| Zm00001d042852_P001 | Maize | cytosol | 12.14 | 34.15 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 37.86 | 34.11 |
| Solyc01g090950.2.1 | Tomato | cytosol | 37.86 | 34.07 |
| Zm00001d027569_P001 | Maize | plastid | 15.17 | 33.55 |
| CDX89065 | Canola | nucleus | 26.45 | 33.27 |
| CDY48367 | Canola | cytosol | 27.02 | 33.16 |
| PGSC0003DMT400012104 | Potato | plastid | 33.53 | 33.14 |
| KRH75351 | Soybean | cytosol | 35.4 | 32.93 |
| Bra003311.1-P | Field mustard | nucleus | 23.99 | 32.81 |
| KRG88927 | Soybean | cytosol | 35.12 | 32.62 |
| CDX83398 | Canola | cytosol | 27.6 | 32.37 |
| KRH76167 | Soybean | cytosol | 34.1 | 32.02 |
| CDY67934 | Canola | cytosol | 27.46 | 31.77 |
| OQU85680 | Sorghum | mitochondrion | 29.62 | 31.68 |
| AT3G60630.1 | Thale cress | cytosol | 28.47 | 31.62 |
| CDY56248 | Canola | cytosol | 27.46 | 31.61 |
| KRH65380 | Soybean | cytosol | 33.38 | 31.56 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 16.04 | 31.36 |
| Bra000375.1-P | Field mustard | cytosol | 27.46 | 31.3 |
| Zm00001d031615_P001 | Maize | cytosol | 12.28 | 31.25 |
| AT2G45160.1 | Thale cress | cytosol | 28.76 | 31.09 |
| GSMUA_Achr3P29970_001 | Banana | cytosol | 22.11 | 28.81 |
| GSMUA_Achr4P03460_001 | Banana | cytosol, plastid | 20.52 | 26.59 |
| GSMUA_Achr4P07190_001 | Banana | plastid | 19.51 | 25.86 |
| GSMUA_Achr1P26740_001 | Banana | cytosol | 17.2 | 22.5 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P21080_001 | EnsemblPlants:GSMUA_Achr11T21080_001 | EnsemblPlantsGene:GSMUA_Achr11G21080_001 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF52 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000295E0CC |
| UniProt:M0RU38 | MapMan:15.5.12 | : | : | : | : |
Description
Putative Scarecrow-like protein 6 [Source:GMGC_GENE;Acc:GSMUA_Achr11G21080_001]
Coordinates
chr11:-:21836430..21838778
Molecular Weight (calculated)
75306.6 Da
IEP (calculated)
5.624
GRAVY (calculated)
-0.022
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGLPYHGQG KGVLEAAETI LEGKQALFWV NKSPKLAIPE VAEPGSVLDH RSPSSPTSTV TLSSSLGSSG SSNTAGVAVV SENPANKWPF SDSGSGAFGT
101: EDWEAELQLI PAQLDTGFVA GGERCGLGVE DWEAMLTETS AASPDREQTS LRWIIGDVVD HSAAGLKQQQ QQVLFSQGLV DFNGSNDGLG FGILDPGIGL
201: ESFGRIVDEL SVSASIGSLP PLASNVITGG SFLLESSNSW VSPPSESAGV KGATFGHQTG SYLTDTMEDK PQLSGAGLLL TQPLATPSPS FFLSAGEVEH
301: QQLPHLLVPT QPKRLHSIHH HQLQHALVDL LFEAARMVEA MNFVGAHGIL ARLNHQLPSP VGKPLIRSAF YFKEALQLFL SNRSNPLHRQ SQFSSHPLTT
401: QWDIVQKLSA YKAFSEVSPI IQFSNFTCIQ ALLEELSGSD RIHIIDFDIG FGGQWSSFMQ ELAQRRSSVA GSVWLLKITV LASGYSQNDL ELQLIRENLS
501: HFASDLNIPF EFNVHCLDSF DPSKLLGMGG EAVAVNLPVA SANLSSMVLL CLVKQLSPKI VVSVDQGCEP SGLPFLQYFL HAFQSSMVLM ESIDASGTDQ
601: DMISKIERFL LQPRIESSIL RRHRVDDKMV SWLAHFATTG FVPIRFSNFT ETQAECLLKR VSIKGFHVEK RQASLFLCWQ HNELVSVSAW RC
101: EDWEAELQLI PAQLDTGFVA GGERCGLGVE DWEAMLTETS AASPDREQTS LRWIIGDVVD HSAAGLKQQQ QQVLFSQGLV DFNGSNDGLG FGILDPGIGL
201: ESFGRIVDEL SVSASIGSLP PLASNVITGG SFLLESSNSW VSPPSESAGV KGATFGHQTG SYLTDTMEDK PQLSGAGLLL TQPLATPSPS FFLSAGEVEH
301: QQLPHLLVPT QPKRLHSIHH HQLQHALVDL LFEAARMVEA MNFVGAHGIL ARLNHQLPSP VGKPLIRSAF YFKEALQLFL SNRSNPLHRQ SQFSSHPLTT
401: QWDIVQKLSA YKAFSEVSPI IQFSNFTCIQ ALLEELSGSD RIHIIDFDIG FGGQWSSFMQ ELAQRRSSVA GSVWLLKITV LASGYSQNDL ELQLIRENLS
501: HFASDLNIPF EFNVHCLDSF DPSKLLGMGG EAVAVNLPVA SANLSSMVLL CLVKQLSPKI VVSVDQGCEP SGLPFLQYFL HAFQSSMVLM ESIDASGTDQ
601: DMISKIERFL LQPRIESSIL RRHRVDDKMV SWLAHFATTG FVPIRFSNFT ETQAECLLKR VSIKGFHVEK RQASLFLCWQ HNELVSVSAW RC
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.