Factsheet for TraesCS7A01G014200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G054400.1
TraesCS5A01G124000.1
TraesCS5B01G062000.3
TraesCS5B01G123600.1
TraesCS5D01G065700.1
TraesCS5D01G131900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	TraesCS5A01G124000.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5B01G123600.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5D01G131900.1	AT1G72030.1	21798944
AT4G00150.1	TraesCS5A01G054400.1	AT1G60490.1	21798944
AT4G00150.1	TraesCS5B01G062000.3	AT1G60490.1	21798944
AT4G00150.1	TraesCS5D01G065700.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G011400.1	Wheat	plastid	88.64	96.8
TraesCS4A01G482000.1	Wheat	plastid	87.61	93.74
Os06t0105350-00	Rice	plastid	59.04	70.14
Zm00001d045589_P001	Maize	cytosol	56.8	66.0
EER87695	Sorghum	cytosol, plastid	58.0	65.69
GSMUA_Achr11P...	Banana	cytosol	37.18	36.3
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	11.36	36.26
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	38.55	35.84
TraesCS6A01G247200.1	Wheat	mitochondrion	41.65	34.38
GSMUA_Achr5P20860_001	Banana	cytosol	32.36	33.94
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	36.66	33.44
VIT_02s0154g00400.t01	Wine grape	cytosol	28.4	32.23
GSMUA_Achr8P11160_001	Banana	cytosol	35.97	31.33
CDX95633	Canola	cytosol	29.6	31.05
Solyc08g078800.1.1	Tomato	plastid	25.13	30.8
Bra003311.1-P	Field mustard	nucleus	26.68	30.63
AT4G00150.1	Thale cress	cytosol, plastid	29.26	30.47
CDY63061	Canola	cytosol, plastid	29.26	30.25
CDY63062	Canola	cytosol, plastid	29.26	30.25
Bra037319.1-P	Field mustard	cytosol, plastid	29.26	30.25
CDX89065	Canola	nucleus	28.06	29.64
CDY48367	Canola	cytosol	28.57	29.43
GSMUA_Achr11P...	Banana	cytosol	34.94	29.34
CDX83398	Canola	cytosol	29.6	29.15
CDY67934	Canola	cytosol	29.43	28.6
Bra000375.1-P	Field mustard	cytosol	29.78	28.5
CDY56248	Canola	cytosol	29.26	28.29
AT3G60630.1	Thale cress	cytosol	29.95	27.93
AT2G45160.1	Thale cress	cytosol	30.12	27.34
Solyc01g090950.2.1	Tomato	cytosol	34.6	26.14
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	34.77	26.06
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	34.42	26.04
KRH75351	Soybean	cytosol	32.53	25.4
KRH76167	Soybean	cytosol	32.01	25.24
KRH65380	Soybean	cytosol	31.67	25.14
KRG88927	Soybean	cytosol	32.01	24.97
PGSC0003DMT400012104	Potato	plastid	29.95	24.86
TraesCS4A01G209800.1	Wheat	cytosol	19.11	23.42
TraesCS4A01G088500.1	Wheat	cytosol	19.11	19.79

Protein Annotations

EnsemblPlants:TraesCS7A01G014200.1	EnsemblPlantsGene:TraesCS7A01G014200	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF43
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr7A:-:6336227..6337972

Molecular Weight (calculated)

61285.7 Da

IEP (calculated)

6.819

GRAVY (calculated)

-0.186

Length

581 amino acids

Sequence
(BLAST)

001: MVAKKEKAPH KHTRAHATPH HRTHIHAHLL PSPLMITTMS SSSCSGLGGG AAANSKRKSP EPTSVLYNRS PSPPTSSSAH SSEPPPISAE DWDAVLLSSG
101: GCDDAMAAAA HGTREDSSFL RWIMDAGYAD GDGDAFGFKG PAPFDPSLLP PPPLHPPPFD ERREEAEEHA FSLPQLPPQL SVPQHPQQGQ VHFPVSTATA
201: RAVGGGDGDL EPQAAVDELL EAARRADAGD PAGAREILAR LNHRLPSPPA PPGHPPLLRA AALLRDALLQ RLLPPTPAGG SSVLSPLDVA LKLAAHKALA
301: DASPTVQFAG FTATQAFLDA LGAGARRVHV VDLDVGFGGH WPPLMQELAH HWRRTAAPST PPPALKVTAL VSPGSRHPLE LHLTQESLAR FAAELGIPFE
401: FAAVAFDPFS PSPPPGLSAA PDEAVAVHIT VGTETSGPTP ASLRVVKQLR PAIVVCVDHG CDRADLPLPS HALNVLRSCA ALVESLDTPG ASLDVAAKVE
501: QFILRPRAER LVTGGEKLPP WRSTFASAGL TPLQLSNAAE AQAECLLRRT ANHGFHVEKQ QAALALWWQR SELVSVSAWR C

Best Arabidopsis Sequence Match ( AT2G45160.1 )
(BLAST)

001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC

Arabidopsis Description

SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.