Factsheet for TraesCS1A01G209400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G054400.1
TraesCS5A01G124000.1
TraesCS5B01G062000.3
TraesCS5B01G123600.1
TraesCS5D01G065700.1
TraesCS5D01G131900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	TraesCS5A01G124000.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5B01G123600.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5D01G131900.1	AT1G72030.1	21798944
AT4G00150.1	TraesCS5A01G054400.1	AT1G60490.1	21798944
AT4G00150.1	TraesCS5B01G062000.3	AT1G60490.1	21798944
AT4G00150.1	TraesCS5D01G065700.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G212800.1	Wheat	cytosol	98.4	99.03
TraesCS1B01G223400.1	Wheat	cytosol, plastid	97.6	97.76
HORVU1Hr1G053510.1	Barley	plastid	94.56	95.32
Os10t0551200-01	Rice	cytosol	54.24	85.18
EER91968	Sorghum	cytosol, mitochondrion	76.96	75.16
Zm00001d022162_P001	Maize	cytosol	19.52	73.94
Zm00001d029855_P001	Maize	mitochondrion	76.0	73.64
Zm00001d035873_P001	Maize	cytosol, plastid	32.96	72.03
Zm00001d042852_P001	Maize	cytosol	27.36	69.51
Zm00001d047957_P001	Maize	cytosol	13.76	66.67
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	35.68	62.99
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	61.12	59.97
Zm00001d031615_P001	Maize	cytosol	26.08	59.93
Zm00001d027569_P001	Maize	plastid	29.76	59.42
Zm00001d018956_P001	Maize	plastid	12.96	56.64
GSMUA_Achr11P...	Banana	cytosol	39.68	41.68
TraesCS4A01G482000.1	Wheat	plastid	35.52	40.88
TraesCS6A01G247200.1	Wheat	mitochondrion	45.44	40.34
GSMUA_Achr5P20860_001	Banana	cytosol	34.88	39.35
TraesCS7A01G014200.1	Wheat	plastid	35.84	38.55
GSMUA_Achr8P11160_001	Banana	cytosol	40.96	38.38
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	11.04	37.91
VIT_02s0154g00400.t01	Wine grape	cytosol	30.08	36.72
AT4G00150.1	Thale cress	cytosol, plastid	32.64	36.56
Solyc08g078800.1.1	Tomato	plastid	27.2	35.87
GSMUA_Achr11P...	Banana	cytosol	39.04	35.26
CDY63062	Canola	cytosol, plastid	31.2	34.7
CDY63061	Canola	cytosol, plastid	31.2	34.7
Bra037319.1-P	Field mustard	cytosol, plastid	31.2	34.7
CDX95633	Canola	cytosol	28.96	32.67
CDX89065	Canola	nucleus	28.0	31.82
Bra003311.1-P	Field mustard	nucleus	25.6	31.62
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.04	31.48
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	38.56	31.38
CDX83398	Canola	cytosol	29.6	31.36
Solyc01g090950.2.1	Tomato	cytosol	38.56	31.34
AT3G60630.1	Thale cress	cytosol	30.72	30.82
CDY67934	Canola	cytosol	29.44	30.77
CDY48367	Canola	cytosol	27.68	30.67
Bra000375.1-P	Field mustard	cytosol	29.28	30.15
KRH75351	Soybean	cytosol	35.68	29.97
KRG88927	Soybean	cytosol	35.68	29.93
KRH76167	Soybean	cytosol	35.04	29.72
CDY56248	Canola	cytosol	28.48	29.62
PGSC0003DMT400012104	Potato	plastid	32.8	29.29
KRH65380	Soybean	cytosol	34.08	29.1
AT2G45160.1	Thale cress	cytosol	29.12	28.44
TraesCS4A01G209800.1	Wheat	cytosol	17.6	23.21
TraesCS4A01G088500.1	Wheat	cytosol	16.64	18.54

Protein Annotations

EnsemblPlants:TraesCS1A01G209400.1	EnsemblPlantsGene:TraesCS1A01G209400	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF125
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr1A:-:372067944..372069821

Molecular Weight (calculated)

65649.2 Da

IEP (calculated)

6.341

GRAVY (calculated)

-0.022

Length

625 amino acids

Sequence
(BLAST)

001: MRGMPFAGEG HAGRLQQQPK LSAGFWAEPT SVLDRRHSPS PSPPSEASAL SSSEVASLAP GGDAKNVSPP PQQHQAWPPG EDAAAGVKEE WAHQLAPLDM
101: AMGLGAGEGW DGTAPPGLAG PDSTFLRWII GGGEDASAGM AGVMDPPALE LDHATSMMSP PTASLGPSLS PFAPAMEEDA KGAPFGHAPS YLLHQHQHHP
201: QPHAAFFGAH PSFESAPPPP KRHHPMAGAP APKLPAFQGH LAPAGGFFPA LKPKAGTAND EAAATVDQLA EAAKFAEAGD AFGAREILAR LNYRLPAAPA
301: AGTPLLRSAF YFKEALRLAL SPNGETPAPP ASTPYDVVLK LGAYKAFSEV SPVLQFAHLT CVQAVLDGLR GAGCIHVLDF DIGMGEQWAS LMQELAQRRP
401: ATALKVTALV SPASHHPLEL QLIHENLSSF AAELGVFFQF TVFNIDTLDP ADLVAIAGGD ALAVHLPVGA AHAAAMPAVL RLVKSLGAKV VVSVDRGCDR
501: TELPFAAHLF QAFQSTVFLL ESVDAVGTDP DTAGKIERFL VQPAVEQCVV GRHRASIEKA PLPWRAVFAS AGFTPVQAST FAESQAESLL HKVPVRGFRV
601: EKRAPGSLCL YWQRAELVSV SAWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.