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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 Zm00001d019343_P001 AT1G72030.1 21798944
AT4G00150.1 Zm00001d050219_P004 AT1G60490.1 21798944
AT4G00150.1 Zm00001d013027_P002 AT5G66720.1 21798944
AT4G00150.1 Zm00001d034575_P001 AT5G66720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d018956_P001 Maize plastid 82.17 74.13
Zm00001d022162_P001 Maize cytosol 50.39 39.39
Zm00001d042852_P001 Maize cytosol 65.89 34.55
Zm00001d031615_P001 Maize cytosol 62.79 29.78
Os10t0551200-01 Rice cytosol 66.67 21.61
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 57.36 20.9
Zm00001d035873_P001 Maize cytosol, plastid 44.96 20.28
Zm00001d027569_P001 Maize plastid 43.41 17.89
Zm00001d029855_P001 Maize mitochondrion 80.62 16.12
Zm00001d027292_P001 Maize peroxisome 57.36 15.38
EER91968 Sorghum cytosol, mitochondrion 74.42 15.0
HORVU1Hr1G053510.1 Barley plastid 67.44 14.03
TraesCS1B01G223400.1 Wheat cytosol, plastid 67.44 13.94
TraesCS1D01G212800.1 Wheat cytosol 66.67 13.85
TraesCS1A01G209400.1 Wheat mitochondrion, plastid 66.67 13.76
Zm00001d022034_P001 Maize cytosol 31.78 13.4
Zm00001d045589_P001 Maize cytosol 46.51 12.0
VIT_02s0154g00400.t01 Wine grape cytosol 39.53 9.96
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 13.95 9.89
GSMUA_Achr11P... Banana cytosol 44.96 9.75
GSMUA_Achr5P20860_001 Banana cytosol 41.09 9.57
Solyc08g078800.1.1 Tomato plastid 34.11 9.28
Zm00001d002718_P001 Maize cytosol 49.61 8.88
Bra003311.1-P Field mustard nucleus 33.33 8.5
GSMUA_Achr8P11160_001 Banana cytosol 43.41 8.4
Zm00001d051387_P001 Maize cytosol 45.74 8.33
CDX95633 Canola cytosol 34.88 8.12
Zm00001d026158_P001 Maize cytosol 44.96 8.08
GSMUA_Achr11P... Banana cytosol 42.64 7.95
AT4G00150.1 Thale cress cytosol, plastid 34.11 7.89
CDX83398 Canola cytosol 35.66 7.8
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 41.09 7.51
CDY63062 Canola cytosol, plastid 32.56 7.47
CDY63061 Canola cytosol, plastid 32.56 7.47
Bra037319.1-P Field mustard cytosol, plastid 32.56 7.47
CDX89065 Canola nucleus 31.78 7.45
CDY48367 Canola cytosol 31.78 7.27
Bra000375.1-P Field mustard cytosol 34.11 7.25
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 42.64 7.16
CDY56248 Canola cytosol 33.33 7.15
Solyc01g090950.2.1 Tomato cytosol 42.64 7.15
AT3G60630.1 Thale cress cytosol 34.11 7.06
CDY67934 Canola cytosol 32.56 7.02
AT2G45160.1 Thale cress cytosol 34.11 6.88
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 40.31 6.71
KRH75351 Soybean cytosol 36.43 6.32
KRG88927 Soybean cytosol 36.43 6.31
PGSC0003DMT400012104 Potato plastid 34.11 6.29
KRH76167 Soybean cytosol 35.66 6.24
Zm00001d053163_P001 Maize cytosol 22.48 6.13
KRH65380 Soybean cytosol 34.11 6.01
Zm00001d041919_P001 Maize cytosol, peroxisome, plastid 20.16 5.28
Zm00001d028526_P001 Maize cytosol 18.6 4.26
Protein Annotations
EnsemblPlants:Zm00001d047957_P001EnsemblPlants:Zm00001d047957_T001EnsemblPlantsGene:Zm00001d047957GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRAS
PANTHER:PTHR31636PANTHER:PTHR31636:SF125PFAM:PF03514ProteinID:AQL08146.1SEG:segUniParc:UPI0008440A28
UniProt:A0A1D6PF45MapMan:15.5.12::::
Description
Scarecrow-like protein 6
Coordinates
chr9:-:146117308..146118116
Molecular Weight (calculated)
13692.6 Da
IEP (calculated)
6.791
GRAVY (calculated)
0.430
Length
129 amino acids
Sequence
(BLAST)
001: MLDELRAAGR IHELAQRCPA ATLKVTALVS PASHHSLELN LIHENLSGFA RELGVFLQFV AYNVDALDPA ELVAITSDNA VAVHLRVGSA HVTALSTVLR
101: LVKRLGVKVV VSVDRGCDLS ALGGEIYTG
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.