Factsheet for Zm00001d053163_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G209800.1	Wheat	cytosol	62.58	62.45
TraesCS4B01G113300.1	Wheat	cytosol	62.37	62.24
Os11t0160550-00	Rice	cytosol	60.04	61.61
TraesCS4D01G110800.1	Wheat	cytosol	61.73	61.6
HORVU4Hr1G020490.26	Barley	cytosol	61.73	61.6
Zm00001d041919_P001	Maize	cytosol, peroxisome, plastid	47.99	46.14
VIT_04s0044g00620.t01	Wine grape	cytosol	30.02	35.59
KRH43393	Soybean	cytosol	34.25	33.26
PGSC0003DMT400010158	Potato	cytosol	33.4	31.98
Solyc11g005610.1.1	Tomato	cytosol	32.98	31.71
Zm00001d022034_P001	Maize	cytosol	18.18	28.1
Zm00001d047957_P001	Maize	cytosol	6.13	22.48
Zm00001d028526_P001	Maize	cytosol	25.58	21.45
Zm00001d027292_P001	Maize	peroxisome	21.78	21.41
Zm00001d045589_P001	Maize	cytosol	21.14	20.0
Zm00001d035873_P001	Maize	cytosol, plastid	11.63	19.23
Zm00001d029855_P001	Maize	mitochondrion	24.31	17.83
Zm00001d018956_P001	Maize	plastid	5.07	16.78
Zm00001d051387_P001	Maize	cytosol	24.52	16.38
Zm00001d002718_P001	Maize	cytosol	24.95	16.37
Zm00001d022162_P001	Maize	cytosol	5.71	16.36
Zm00001d027569_P001	Maize	plastid	10.78	16.29
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	24.1	16.15
Zm00001d026158_P001	Maize	cytosol	24.31	16.02
Zm00001d042852_P001	Maize	cytosol	7.4	14.23
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	10.57	14.12
Zm00001d031615_P001	Maize	cytosol	7.19	12.5

Protein Annotations

EnsemblPlants:Zm00001d053163_P001	EnsemblPlants:Zm00001d053163_T001	EnsemblPlantsGene:Zm00001d053163	EntrezGene:103654627	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF61	PFAM:PF03514	PFscan:PS50985	ProteinID:AQK58860.1
SEG:seg	UniParc:UPI00022215E3	UniProt:K7UPJ5	MapMan:15.5.12	:	:

Description

GRAS-transcription factor 9Scarecrow-like protein 26

Coordinates

chr4:+:217428587..217430008

Molecular Weight (calculated)

51703.1 Da

IEP (calculated)

4.497

GRAVY (calculated)

0.013

Length

473 amino acids

Sequence
(BLAST)

001: METISYPCSP LIFFPTHEES SHSLWSPQLN LHENATIPAD PSPDAREDRE FFDTIAIGSS DSHDQYAFEA DVFTHCDERF LCQESANLAA LQDELMEENS
101: LSDLLLTVAD AVEAGDSSLA LAVLSKLNGL LASTCDNAPS SSFGRLACHF ALGLQSRIPG ACSPCYLPDP VPAGIMSAHQ MIQELSPYVK FAHFTANQAI
201: LDATTGDMDI HVIDFNLGEG VQWPSLMSDL ARLGGKALHL TAIITDAVYN DDDDDDNTHQ TAARRLSEFA ESLNLPFRYN SLRVRHAEDL DDFSRNCEGP
301: VVVSCDTTNL CYRSGSRLQM LLLVCARKLQ PKSVVVIEDE LVRIGKEACL SQASFVEFFF EALHHFTTVF ESLSSCFSSS SSRACLRLVE KGMVGPRIQD
401: FVGMYGSVTL EAAAAPKALE GFVSCELSAC NIAQATMLVG LFSRSFGVAH EKGRLQLCWK SRPLISVSAW TPV

Best Arabidopsis Sequence Match ( AT3G03450.1 )
(BLAST)

001: MKRGYGETWD PPPKPLPASR SGEGPSMADK KKADDDNNNS NMDDELLAVL GYKVRSSEMA EVAQKLEQLE MVLSNDDVGS TVLNDSVHYN PSDLSNWVES
101: MLSELNNPAS SDLDTTRSCV DRSEYDLRAI PGLSAFPKEE EVFDEEASSK RIRLGSWCES SDESTRSVVL VDSQETGVRL VHALVACAEA IHQENLNLAD
201: ALVKRVGTLA GSQAGAMGKV ATYFAQALAR RIYRDYTAET DVCAAVNPSF EEVLEMHFYE SCPYLKFAHF TANQAILEAV TTARRVHVID LGLNQGMQWP
301: ALMQALALRP GGPPSFRLTG IGPPQTENSD SLQQLGWKLA QFAQNMGVEF EFKGLAAESL SDLEPEMFET RPESETLVVN SVFELHRLLA RSGSIEKLLN
401: TVKAIKPSIV TVVEQEANHN GIVFLDRFNE ALHYYSSLFD SLEDSYSLPS QDRVMSEVYL GRQILNVVAA EGSDRVERHE TAAQWRIRMK SAGFDPIHLG
501: SSAFKQASML LSLYATGDGY RVEENDGCLM IGWQTRPLIT TSAWKLA

Arabidopsis Description

RGL2RGL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VH73]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.