Factsheet for Zm00001d002023_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Zm00001d019343_P001	AT1G72030.1	21798944
AT4G00150.1	Zm00001d050219_P004	AT1G60490.1	21798944
AT4G00150.1	Zm00001d013027_P002	AT5G66720.1	21798944
AT4G00150.1	Zm00001d034575_P001	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042852_P001	Maize	cytosol	55.93	80.49
Zm00001d031615_P001	Maize	cytosol	54.24	70.59
Zm00001d047957_P001	Maize	cytosol	20.9	57.36
Zm00001d018956_P001	Maize	plastid	21.19	52.45
Zm00001d029855_P001	Maize	mitochondrion	83.33	45.74
Zm00001d022162_P001	Maize	cytosol	20.62	44.24
EER91968	Sorghum	cytosol, mitochondrion	77.12	42.66
Zm00001d035873_P001	Maize	cytosol, plastid	34.18	42.31
Zm00001d027569_P001	Maize	plastid	32.2	36.42
TraesCS1D01G212800.1	Wheat	cytosol	62.71	35.75
TraesCS1B01G223400.1	Wheat	cytosol, plastid	62.99	35.74
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	62.99	35.68
HORVU1Hr1G053510.1	Barley	plastid	60.73	34.68
Os10t0551200-01	Rice	cytosol	35.59	31.66
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	14.97	29.12
Zm00001d027292_P001	Maize	peroxisome	39.27	28.9
Zm00001d022034_P001	Maize	cytosol	22.32	25.82
Zm00001d045589_P001	Maize	cytosol	30.23	21.4
Zm00001d002718_P001	Maize	cytosol	40.96	20.11
GSMUA_Achr11P...	Banana	cytosol	33.62	20.0
Zm00001d026158_P001	Maize	cytosol	39.27	19.36
Zm00001d051387_P001	Maize	cytosol	37.29	18.64
GSMUA_Achr5P20860_001	Banana	cytosol	28.53	18.23
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	35.03	17.56
GSMUA_Achr8P11160_001	Banana	cytosol	33.05	17.54
GSMUA_Achr11P...	Banana	cytosol	31.36	16.04
VIT_02s0154g00400.t01	Wine grape	cytosol	23.16	16.02
CDY63062	Canola	cytosol, plastid	23.73	14.95
CDY63061	Canola	cytosol, plastid	23.73	14.95
Bra037319.1-P	Field mustard	cytosol, plastid	23.73	14.95
Solyc08g078800.1.1	Tomato	plastid	19.49	14.56
CDX89065	Canola	nucleus	22.6	14.55
AT4G00150.1	Thale cress	cytosol, plastid	22.88	14.52
CDY48367	Canola	cytosol	22.88	14.36
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	31.07	14.19
Bra003311.1-P	Field mustard	nucleus	19.77	13.83
AT3G60630.1	Thale cress	cytosol	23.45	13.32
PGSC0003DMT400012104	Potato	plastid	26.27	13.29
CDX95633	Canola	cytosol	20.62	13.18
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	28.25	13.02
KRH75351	Soybean	cytosol	27.12	12.9
Solyc01g090950.2.1	Tomato	cytosol	27.97	12.87
KRG88927	Soybean	cytosol	26.55	12.62
CDX83398	Canola	cytosol	20.9	12.54
CDY56248	Canola	cytosol	20.9	12.31
CDY67934	Canola	cytosol	20.62	12.21
Bra000375.1-P	Field mustard	cytosol	20.34	11.86
AT2G45160.1	Thale cress	cytosol	21.19	11.72
KRH76167	Soybean	cytosol	24.01	11.53
KRH65380	Soybean	cytosol	23.73	11.48
Zm00001d053163_P001	Maize	cytosol	14.12	10.57
Zm00001d041919_P001	Maize	cytosol, peroxisome, plastid	13.28	9.55
Zm00001d028526_P001	Maize	cytosol	12.99	8.16

Protein Annotations

EnsemblPlants:Zm00001d002023_P001	EnsemblPlants:Zm00001d002023_T001	EnsemblPlantsGene:Zm00001d002023	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF125	PFAM:PF03514	PFscan:PS50985	ProteinID:ONM12800.1	SEG:seg
UniParc:UPI0002208D51	UniProt:A0A1D6DVQ3	MapMan:15.5.12	:	:	:

Description

GRAS-transcription factor 35Scarecrow-like protein 6

Coordinates

chr2:-:4587796..4589602

Molecular Weight (calculated)

36609.9 Da

IEP (calculated)

6.239

GRAVY (calculated)

0.160

Length

354 amino acids

Sequence
(BLAST)

001: MPTYTVRHSL PVGAAAVAGA NAKNVSPPPV AAAWPGGGGA EEAVAGGKEE WQLTPLDMGL GVGEGWDVAD AVAPPGLAPD HTFLRWIIGG EDASATMGSV
101: MDSPVLELDH APSMMSLAFG STMPFAPTLE DAKPGTALVS PASHHRLELN LIHENLSGFA RELGVFLQFA TYNVDALDPA ELVAITSGDA VAVHLPVGSA
201: HVAAMPAVLR LVKRLGAKAF QPCVSLLDSV DAVGGADAEA VGRIERFMVQ SDVELRVVSR HRAAAAVDKP PPLPWRTGLA SAGLMPVQAS TFAESQAEAL
301: LKRMALMGFR VEKRGGALCF LLAARSASTV SAASWSPCRR GGADRRGYAA ATKS

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.