Factsheet for Zm00001d002718_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Zm00001d019343_P001	AT1G72030.1	21798944
AT4G00150.1	Zm00001d050219_P004	AT1G60490.1	21798944
AT4G00150.1	Zm00001d013027_P002	AT5G66720.1	21798944
AT4G00150.1	Zm00001d034575_P001	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11245	Sorghum	cytosol, nucleus, peroxisome	92.79	92.92
Zm00001d022034_P001	Maize	cytosol	38.84	91.5
Zm00001d026158_P001	Maize	cytosol	89.74	90.11
Os04t0555000-01	Rice	cytosol	78.09	79.18
Zm00001d051387_P001	Maize	cytosol	67.68	68.93
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	65.33	66.71
Zm00001d047957_P001	Maize	cytosol	8.88	49.61
GSMUA_Achr11P...	Banana	cytosol	40.5	49.08
Zm00001d027292_P001	Maize	peroxisome	32.73	49.06
Zm00001d035873_P001	Maize	cytosol, plastid	18.59	46.85
Zm00001d022162_P001	Maize	cytosol	10.4	45.45
GSMUA_Achr5P20860_001	Banana	cytosol	34.67	45.13
Zm00001d029855_P001	Maize	mitochondrion	40.22	44.96
Zm00001d045589_P001	Maize	cytosol	30.93	44.6
Zm00001d018956_P001	Maize	plastid	8.74	44.06
GSMUA_Achr8P11160_001	Banana	cytosol	39.81	43.03
Zm00001d042852_P001	Maize	cytosol	14.42	42.28
GSMUA_Achr11P...	Banana	cytosol	40.08	41.76
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	20.11	40.96
VIT_02s0154g00400.t01	Wine grape	cytosol	28.85	40.62
AT4G00150.1	Thale cress	cytosol, plastid	30.93	39.96
Zm00001d027569_P001	Maize	plastid	16.78	38.66
Solyc08g078800.1.1	Tomato	plastid	24.97	37.97
Zm00001d031615_P001	Maize	cytosol	14.29	37.87
CDY63061	Canola	cytosol, plastid	28.99	37.19
Bra037319.1-P	Field mustard	cytosol, plastid	28.99	37.19
CDY63062	Canola	cytosol, plastid	28.99	37.19
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.11	36.39
CDX95633	Canola	cytosol	27.46	35.74
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	9.02	35.71
Bra003311.1-P	Field mustard	nucleus	24.69	35.18
CDY67934	Canola	cytosol	28.99	34.95
CDY56248	Canola	cytosol	28.43	34.11
CDX83398	Canola	cytosol	27.88	34.07
Solyc01g090950.2.1	Tomato	cytosol	36.06	33.81
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	35.92	33.72
Bra000375.1-P	Field mustard	cytosol	28.16	33.44
KRG88927	Soybean	cytosol	34.54	33.42
AT2G45160.1	Thale cress	cytosol	29.54	33.28
KRH75351	Soybean	cytosol	34.12	33.06
CDX89065	Canola	nucleus	25.1	32.91
KRH76167	Soybean	cytosol	33.43	32.7
CDY48367	Canola	cytosol	25.52	32.62
AT3G60630.1	Thale cress	cytosol	28.16	32.58
PGSC0003DMT400012104	Potato	plastid	31.21	32.14
KRH65380	Soybean	cytosol	32.18	31.69
Zm00001d053163_P001	Maize	cytosol	16.37	24.95
Zm00001d041919_P001	Maize	cytosol, peroxisome, plastid	14.98	21.95
Zm00001d028526_P001	Maize	cytosol	15.67	20.04

Protein Annotations

EMBL:BT063450	EnsemblPlants:Zm00001d002718_P001	EnsemblPlants:Zm00001d002718_T001	EnsemblPlantsGene:Zm00001d002718	EntrezGene:100382187	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF64	PFAM:PF03514	PFscan:PS50985
ProteinID:ONM15187.1	SEG:seg	UniParc:UPI0001948F44	UniProt:C0P581	MapMan:15.5.12	:

Description

GRAS-transcription factor 31Scarecrow-like protein 6

Coordinates

chr2:-:20400045..20402210

Molecular Weight (calculated)

75229.8 Da

IEP (calculated)

6.116

GRAVY (calculated)

-0.050

Length

721 amino acids

Sequence
(BLAST)

001: MRAAPFSADG NGAGTIEALL WPHGKGGGGG HLLLEPTSVL DCRRSPSPPY STSTLSSSLG GAAGDSFSGV AAVSENSAAA AAEATKWAAP GEHGSGGGGG
101: GSGGGRKEEW PGGDLPPIPG ALDIGFVGEE GWDAMLGDAA AAAGQDQTFL NWIMAAPGDM EPPPPPPPLL GNAAGFGFPA PDPLGFSLQH HPGGGGASAG
201: ALASDLSSPG ARSLSGSSGS GSKATSTFGL LPTEAVLQPP PPPAATTMRF HDGADIKPPL LGVPSAGLLH QHQTLPAASF FMPLPSFPDH QHQPHLPPPP
301: KRHHSMPDNL FLLQNQLQPP PSQGLPFPPL HTTTPFQLQP PLQPPRGAMK TTPAAQQHQQ LLDELAAAAM AAEVGNSIGA REILARLNQQ LPPIGKPLLR
401: SASYLREALL LALTDGHQGS TRVTSPLDVA LKLGAYKSFS DLSPVLQFAN FTATQALLDE IASTTSSCIR IIDFDLGVGG QWASFLQELA YRRGTGNGPL
501: PMLKLTAFVS SASHHPLELH LTRENLSQFA VDLGIPFEFT AINLDAFDPA ELIAPSADEV VAVCLPVGCS ARTPPLPMLL QLVKQLAPKI VVAIDHGSDR
601: GDLPFSQHFM NCFQSCMFLL DSLDAAGTNA DAASKIERFL IQPRVEDAVL GRRKAEKAMA WRAVFTSAGF APVPLSNLAE AQADCLLKRV QVRGFHVEKC
701: GMGLALYWQR GELVSVSAWR C

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.