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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • mitochondrion 2
  • cytosol 2
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, secretory
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 Zm00001d019343_P001 AT1G72030.1 21798944
AT4G00150.1 Zm00001d050219_P004 AT1G60490.1 21798944
AT4G00150.1 Zm00001d013027_P002 AT5G66720.1 21798944
AT4G00150.1 Zm00001d034575_P001 AT5G66720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d022034_P001 Maize cytosol 40.53 95.1
EES11245 Sorghum cytosol, nucleus, peroxisome 90.53 90.28
Zm00001d002718_P001 Maize cytosol 90.11 89.74
Os04t0555000-01 Rice cytosol 76.04 76.79
Zm00001d051387_P001 Maize cytosol 65.04 65.96
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 64.35 65.44
Zm00001d027292_P001 Maize peroxisome 31.75 47.4
GSMUA_Achr11P... Banana cytosol 38.44 46.39
Zm00001d035873_P001 Maize cytosol, plastid 18.11 45.45
Zm00001d047957_P001 Maize cytosol 8.08 44.96
Zm00001d045589_P001 Maize cytosol 30.36 43.6
GSMUA_Achr5P20860_001 Banana cytosol 33.43 43.32
Zm00001d029855_P001 Maize mitochondrion 38.44 42.79
Zm00001d022162_P001 Maize cytosol 9.61 41.82
GSMUA_Achr8P11160_001 Banana cytosol 38.58 41.53
Zm00001d042852_P001 Maize cytosol 14.07 41.06
VIT_02s0154g00400.t01 Wine grape cytosol 29.25 41.02
GSMUA_Achr11P... Banana cytosol 38.58 40.03
AT4G00150.1 Thale cress cytosol, plastid 31.06 39.96
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 19.36 39.27
Zm00001d018956_P001 Maize plastid 7.66 38.46
Solyc08g078800.1.1 Tomato plastid 25.35 38.4
Zm00001d027569_P001 Maize plastid 16.57 38.02
CDY63062 Canola cytosol, plastid 28.83 36.83
CDY63061 Canola cytosol, plastid 28.83 36.83
Bra037319.1-P Field mustard cytosol, plastid 28.83 36.83
Zm00001d031615_P001 Maize cytosol 13.65 36.03
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 38.3 35.48
CDX95633 Canola cytosol 26.74 34.66
Bra003311.1-P Field mustard nucleus 24.09 34.19
CDY67934 Canola cytosol 28.41 34.11
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 8.64 34.07
CDX83398 Canola cytosol 27.44 33.39
Solyc01g090950.2.1 Tomato cytosol 35.65 33.29
CDY56248 Canola cytosol 27.86 33.28
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 35.38 33.07
KRG88927 Soybean cytosol 34.26 33.02
Bra000375.1-P Field mustard cytosol 27.72 32.78
AT2G45160.1 Thale cress cytosol 29.11 32.66
KRH75351 Soybean cytosol 33.57 32.39
KRH76167 Soybean cytosol 33.15 32.29
AT3G60630.1 Thale cress cytosol 27.99 32.26
CDX89065 Canola nucleus 24.65 32.18
PGSC0003DMT400012104 Potato plastid 31.34 32.14
CDY48367 Canola cytosol 25.07 31.91
KRH65380 Soybean cytosol 32.17 31.56
Zm00001d053163_P001 Maize cytosol 16.02 24.31
Zm00001d041919_P001 Maize cytosol, peroxisome, plastid 14.62 21.34
Zm00001d028526_P001 Maize cytosol 15.88 20.21
Protein Annotations
EntrezGene:100381701MapMan:15.5.12ProteinID:AQK45738.1EMBL:BT062028UniProt:C0HI72GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR005202EMBL:KJ726956PFAM:PF03514PFscan:PS50985PANTHER:PTHR31636PANTHER:PTHR31636:SF64
InterPro:TF_GRASUniParc:UPI000194890EEnsemblPlantsGene:Zm00001d026158EnsemblPlants:Zm00001d026158_P001EnsemblPlants:Zm00001d026158_T001SEG:seg
Description
GRAS-transcription factor 79Scarecrow-like protein 6
Coordinates
chr10:-:140012416..140014572
Molecular Weight (calculated)
75354.5 Da
IEP (calculated)
6.094
GRAVY (calculated)
-0.081
Length
718 amino acids
Sequence
(BLAST)
001: MRAAPFSADG KGAGTIEALL WPNGKGGGGG DLLLEPTSVL DCRRSPSPRY SSSTLSSSLG GAAGDSSSGV AAVSENSAAA AAEATKWAAP GEHRGGGEGG
101: GGGGSRKEWS GGELPPIPGT LDIGFGAEEG WDAMLGDAAA VVGQDQTFLN WIMTAPGDME PPALALLGNA AGFEFPASDP IGFSLQHHPT GGGTSVGALA
201: SDLSSPSARS LTSSSGSSSK ATSTFGLLRT EAVFQPPPPA TTMPFHDGAD IKPAHLGVPS ASLLLNQHQA LSAASFMPLP SFPDHQHQPH LPPPPKRHHS
301: MPENLFLLQN QLQPPPPPPQ GLRFPPLHTT APFQLQPSLQ PPRGSMKTTP AAQQHQQLLD ELAAAAKAAE VGNSIGGREI LARLNQQLPP IGKPFLRSAS
401: YLKEALLLAL TDGHQGSTHL SSPLDVALKL GAYKSFSDLS PVLQFANFTA TQALLDEIAS TTSSCIHIID FDLGVGGQWA SFLQEFAHRR GTGNAPLPML
501: KLTAFVSSAS HHPLELHLTR ENLTQFAVDL GIPFEFTDIN LDAFDPAEFI APSPNEVVAV CIPVGCSART PPLPMLLQLV KQLAPKIAVA IDHGSDRGDL
601: PFSQHFMNCF QSCMFLLDSL DAAGTNADAA SKIERFLIQP RVEDAVLGRR KAENAMAWRA VFTSAGFAPV PLSNLAEAQA DCLLKRVQVR GFHVEKCGMG
701: LALYWQSGEL VSVSAWRC
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [cytosol,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.