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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
ChloroP:plastid
MultiLoc:cytosol
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 Zm00001d019343_P001 AT1G72030.1 21798944
AT4G00150.1 Zm00001d050219_P004 AT1G60490.1 21798944
AT4G00150.1 Zm00001d013027_P002 AT5G66720.1 21798944
AT4G00150.1 Zm00001d034575_P001 AT5G66720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d035873_P001 Maize cytosol, plastid 65.18 71.33
Os10t0551200-01 Rice cytosol 55.91 43.97
Zm00001d047957_P001 Maize cytosol 17.89 43.41
Zm00001d018956_P001 Maize plastid 18.21 39.86
Zm00001d042852_P001 Maize cytosol 28.75 36.59
Zm00001d029855_P001 Maize mitochondrion 73.16 35.5
Zm00001d031615_P001 Maize cytosol 29.07 33.46
EER91968 Sorghum cytosol, mitochondrion 68.37 33.44
Zm00001d022162_P001 Maize cytosol 17.57 33.33
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 36.42 32.2
Zm00001d027292_P001 Maize peroxisome 48.56 31.6
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 17.57 30.22
HORVU1Hr1G053510.1 Barley plastid 59.42 30.0
TraesCS1B01G223400.1 Wheat cytosol, plastid 59.74 29.97
TraesCS1D01G212800.1 Wheat cytosol 59.42 29.95
TraesCS1A01G209400.1 Wheat mitochondrion, plastid 59.42 29.76
Zm00001d022034_P001 Maize cytosol 26.52 27.12
Zm00001d045589_P001 Maize cytosol 34.82 21.8
VIT_02s0154g00400.t01 Wine grape cytosol 32.91 20.12
Solyc08g078800.1.1 Tomato plastid 28.11 18.57
GSMUA_Achr11P... Banana cytosol 34.19 17.98
GSMUA_Achr8P11160_001 Banana cytosol 37.38 17.54
GSMUA_Achr5P20860_001 Banana cytosol 30.03 16.97
Zm00001d051387_P001 Maize cytosol 38.34 16.95
Zm00001d002718_P001 Maize cytosol 38.66 16.78
Zm00001d026158_P001 Maize cytosol 38.02 16.57
Bra003311.1-P Field mustard nucleus 26.2 16.21
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 36.1 16.01
Bra037319.1-P Field mustard cytosol, plastid 27.8 15.48
CDY63061 Canola cytosol, plastid 27.8 15.48
CDY63062 Canola cytosol, plastid 27.8 15.48
GSMUA_Achr11P... Banana cytosol 33.55 15.17
AT4G00150.1 Thale cress cytosol, plastid 26.84 15.05
CDX89065 Canola nucleus 25.88 14.73
CDX95633 Canola cytosol 24.6 13.9
CDY48367 Canola cytosol 24.92 13.83
CDX83398 Canola cytosol 25.88 13.73
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 33.87 13.68
CDY67934 Canola cytosol 25.88 13.55
AT3G60630.1 Thale cress cytosol 26.84 13.48
CDY56248 Canola cytosol 25.56 13.31
Solyc01g090950.2.1 Tomato cytosol 32.27 13.13
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 31.95 13.02
Bra000375.1-P Field mustard cytosol 25.24 13.01
AT2G45160.1 Thale cress cytosol 25.88 12.66
PGSC0003DMT400012104 Potato plastid 27.8 12.43
KRH75351 Soybean cytosol 29.39 12.37
KRG88927 Soybean cytosol 29.39 12.35
KRH76167 Soybean cytosol 27.8 11.8
KRH65380 Soybean cytosol 26.84 11.48
Zm00001d053163_P001 Maize cytosol 16.29 10.78
Zm00001d041919_P001 Maize cytosol, peroxisome, plastid 16.61 10.57
Zm00001d028526_P001 Maize cytosol 15.65 8.69
Protein Annotations
EnsemblPlants:Zm00001d027569_P001EnsemblPlants:Zm00001d027569_T001EnsemblPlantsGene:Zm00001d027569GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRAS
PANTHER:PTHR31636PANTHER:PTHR31636:SF125PFAM:PF03514PFscan:PS50985ProteinID:ONL93439.1SEG:seg
UniParc:UPI000221A6E3UniProt:A0A1D6JN21MapMan:15.5.12:::
Description
Scarecrow-like protein 6
Coordinates
chr1:+:8246625..8247566
Molecular Weight (calculated)
33290.4 Da
IEP (calculated)
10.113
GRAVY (calculated)
0.034
Length
313 amino acids
Sequence
(BLAST)
001: MAGAPTPKLP SFPGPVAQAG GGFASALKPK AKAGNDEAAA AVDQLAEGPR PATPSAPARY WRGSIIGSPP SPWPGRHCSA QPSTSRRPCA LRSPRPARPW
101: RPRAVLTSYD VVLKLGAYKV FSEVSPMLQF AHPTCVQAVL DELDVFLQFA AYNEDALDAA ELVAITSGDA VAVHLPVGSA HVAAMPAVLR LVKRLGAKVV
201: VFVDRGCDST ELPFATHLLQ AFQSCVSLLR VPAGLRRRRG GGANAEAVGK IERLMDKPPP LPWRTMLASA GFVLVQASTF AESQAEALLK RIALMEFRVE
301: KRGELVSMSA WQC
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.