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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • mitochondrion 3
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 Zm00001d019343_P001 AT1G72030.1 21798944
AT4G00150.1 Zm00001d050219_P004 AT1G60490.1 21798944
AT4G00150.1 Zm00001d013027_P002 AT5G66720.1 21798944
AT4G00150.1 Zm00001d034575_P001 AT5G66720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d026158_P001 Maize cytosol 95.1 40.53
Zm00001d002718_P001 Maize cytosol 91.5 38.84
EES11245 Sorghum cytosol, nucleus, peroxisome 90.2 38.33
Zm00001d027292_P001 Maize peroxisome 56.21 35.76
Os04t0555000-01 Rice cytosol 81.37 35.02
Zm00001d035873_P001 Maize cytosol, plastid 31.05 33.22
Zm00001d051387_P001 Maize cytosol 75.82 32.77
Zm00001d047957_P001 Maize cytosol 13.4 31.78
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 73.2 31.73
VIT_02s0154g00400.t01 Wine grape cytosol 50.33 30.08
Solyc08g078800.1.1 Tomato plastid 45.1 29.11
Zm00001d045589_P001 Maize cytosol 47.39 29.0
Zm00001d022162_P001 Maize cytosol 15.03 27.88
GSMUA_Achr11P... Banana cytosol 53.27 27.39
GSMUA_Achr5P20860_001 Banana cytosol 48.04 26.53
Zm00001d027569_P001 Maize plastid 27.12 26.52
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 15.69 26.37
GSMUA_Achr8P11160_001 Banana cytosol 55.23 25.34
Zm00001d029855_P001 Maize mitochondrion 53.27 25.27
Zm00001d018956_P001 Maize plastid 11.76 25.17
AT4G00150.1 Thale cress cytosol, plastid 45.75 25.09
CDY63062 Canola cytosol, plastid 44.77 24.38
Bra037319.1-P Field mustard cytosol, plastid 44.77 24.38
CDY63061 Canola cytosol, plastid 44.77 24.38
Bra003311.1-P Field mustard nucleus 39.22 23.72
GSMUA_Achr11P... Banana cytosol 51.96 22.98
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 25.82 22.32
CDX95633 Canola cytosol 39.87 22.02
Zm00001d042852_P001 Maize cytosol 17.32 21.54
CDX89065 Canola nucleus 38.24 21.27
CDY48367 Canola cytosol 38.24 20.74
CDY67934 Canola cytosol 40.2 20.57
AT3G60630.1 Thale cress cytosol 41.83 20.55
CDX83398 Canola cytosol 39.54 20.51
Bra000375.1-P Field mustard cytosol 39.54 19.93
CDY56248 Canola cytosol 38.89 19.8
PGSC0003DMT400012104 Potato plastid 45.1 19.71
Solyc01g090950.2.1 Tomato cytosol 49.35 19.64
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 49.02 19.53
AT2G45160.1 Thale cress cytosol 40.85 19.53
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 49.35 19.48
KRH65380 Soybean cytosol 45.75 19.13
KRH76167 Soybean cytosol 45.75 19.0
KRG88927 Soybean cytosol 46.08 18.93
KRH75351 Soybean cytosol 45.42 18.68
Zm00001d031615_P001 Maize cytosol 16.34 18.38
Zm00001d053163_P001 Maize cytosol 28.1 18.18
Zm00001d041919_P001 Maize cytosol, peroxisome, plastid 26.14 16.26
Zm00001d028526_P001 Maize cytosol 28.1 15.25
Protein Annotations
EnsemblPlants:Zm00001d022034_P001EnsemblPlants:Zm00001d022034_T001EnsemblPlantsGene:Zm00001d022034GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRAS
PANTHER:PTHR31636PANTHER:PTHR31636:SF64PFAM:PF03514PFscan:PS50985ProteinID:ONM59346.1UniParc:UPI00084500C7
UniProt:A0A1D6IIN9MapMan:15.5.12::::
Description
GRAS-transcription factor 63Scarecrow-like protein 6
Coordinates
chr7:-:168331519..168332583
Molecular Weight (calculated)
33522.3 Da
IEP (calculated)
6.507
GRAVY (calculated)
0.086
Length
306 amino acids
Sequence
(BLAST)
001: MAKAAEVGNS IGRREILARL NQQLPPIGKP FLRSASYLKE ALLLALTDSH QGSTHLSSPL DVTLKLGAYK SFSDLSHVLQ FANFTATQAL LDEIASTTSS
101: CIHIIDFNLG VGGQWASFLQ ELAHRRGTGN APLPMLKLTA FVSSASHHPL ELHLTRENLT QFAVDLGIPF EFTDINLDVF DPAELIAPSP NEHFMNCFQP
201: CMFLLDSLDA AGTNVDVASK IERFLIQPRV EDAVLGRQKA EKAMAWRAVF TSAGFAPVPL SNLAEAQADY LLKRVQVRGF HVEKCGMGLA LYWQSGELVS
301: VSAWRC
Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)
001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF
Arabidopsis Description
SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.