Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83398 | Canola | cytosol | 96.93 | 91.02 |
| CDY67934 | Canola | cytosol | 81.77 | 75.75 |
| CDY56248 | Canola | cytosol | 80.69 | 74.38 |
| AT2G45160.1 | Thale cress | cytosol | 82.85 | 71.72 |
| CDX89065 | Canola | nucleus | 59.57 | 60.0 |
| CDY48367 | Canola | cytosol | 59.39 | 58.33 |
| CDY63062 | Canola | cytosol, plastid | 43.14 | 42.53 |
| CDY63061 | Canola | cytosol, plastid | 43.14 | 42.53 |
| Zm00001d022034_P001 | Maize | cytosol | 22.02 | 39.87 |
| Os10t0551200-01 | Rice | cytosol | 25.81 | 35.93 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 49.28 | 35.23 |
| Zm00001d047957_P001 | Maize | cytosol | 8.12 | 34.88 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 29.96 | 34.8 |
| KRH76167 | Soybean | cytosol | 46.21 | 34.74 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 33.03 | 34.66 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 47.83 | 34.51 |
| Solyc01g090950.2.1 | Tomato | cytosol | 47.83 | 34.46 |
| KRG88927 | Soybean | cytosol | 46.21 | 34.36 |
| KRH65380 | Soybean | cytosol | 45.13 | 34.15 |
| Os06t0105350-00 | Rice | plastid | 29.96 | 33.95 |
| Zm00001d045589_P001 | Maize | cytosol | 30.51 | 33.8 |
| KRH75351 | Soybean | cytosol | 45.13 | 33.6 |
| EER87695 | Sorghum | cytosol, plastid | 30.14 | 32.55 |
| TraesCS7D01G011400.1 | Wheat | plastid | 31.23 | 32.52 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 32.13 | 32.13 |
| GSMUA_Achr11P... | Banana | cytosol | 34.48 | 32.1 |
| TraesCS4A01G482000.1 | Wheat | plastid | 30.87 | 31.49 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 15.88 | 30.77 |
| Zm00001d027292_P001 | Maize | peroxisome | 25.81 | 29.73 |
| CDX72597 | Canola | cytosol | 24.73 | 29.72 |
| TraesCS7A01G014200.1 | Wheat | plastid | 31.05 | 29.6 |
| HORVU1Hr1G053510.1 | Barley | plastid | 32.67 | 29.19 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 35.02 | 29.09 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 32.49 | 28.99 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 32.67 | 28.96 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 32.49 | 28.85 |
| CDY43895 | Canola | cytosol | 25.45 | 28.72 |
| Os03t0103400-01 | Rice | cytosol | 24.55 | 28.69 |
| CDY13032 | Canola | cytosol | 25.45 | 28.6 |
| CDX75590 | Canola | cytosol | 25.09 | 28.54 |
| CDX69238 | Canola | cytosol | 24.73 | 28.02 |
| GSMUA_Achr11P... | Banana | cytosol | 34.66 | 27.75 |
| Os02t0662700-01 | Rice | cytosol | 35.2 | 27.5 |
| EER91968 | Sorghum | cytosol, mitochondrion | 31.77 | 27.5 |
| Zm00001d002718_P001 | Maize | cytosol | 35.74 | 27.46 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 35.02 | 27.44 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 34.66 | 27.43 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 34.84 | 27.41 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 35.56 | 27.36 |
| Zm00001d018956_P001 | Maize | plastid | 7.04 | 27.27 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 34.48 | 27.17 |
| Zm00001d051387_P001 | Maize | cytosol | 34.66 | 27.12 |
| Os04t0555000-01 | Rice | cytosol | 34.66 | 27.0 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 31.05 | 27.0 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 31.23 | 26.95 |
| Zm00001d026158_P001 | Maize | cytosol | 34.66 | 26.74 |
| EES05768 | Sorghum | cytosol | 34.48 | 26.68 |
| Zm00001d029855_P001 | Maize | mitochondrion | 31.05 | 26.67 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 30.69 | 26.65 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 30.87 | 26.64 |
| Os02t0663100-01 | Rice | cytosol | 34.12 | 26.43 |
| Zm00001d022162_P001 | Maize | cytosol | 7.58 | 25.45 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 32.13 | 25.21 |
| Zm00001d027569_P001 | Maize | plastid | 13.9 | 24.6 |
| Zm00001d042852_P001 | Maize | cytosol | 10.47 | 23.58 |
| OQU85680 | Sorghum | mitochondrion | 25.27 | 21.64 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 13.18 | 20.62 |
| Zm00001d031615_P001 | Maize | cytosol | 10.11 | 20.59 |
| CDY45672 | Canola | cytosol | 17.51 | 19.84 |
| CDY17336 | Canola | cytosol | 17.33 | 19.24 |
Protein Annotations
| EnsemblPlants:CDX95633 | EnsemblPlantsGene:GSBRNA2T00101513001 | GO:A0A078E8E7 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF11 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDX95633 | ProteinID:CDX95633.1 | SEG:seg |
| UniParc:UPI0004EEBB10 | MapMan:15.5.12 | : | : | : | : |
Description
BnaC03g25140D
Coordinates
chrLK031890:-:361274..363227
Molecular Weight (calculated)
61072.2 Da
IEP (calculated)
5.865
GRAVY (calculated)
-0.210
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLSFERFQG EGVFSVSSFY SDSHKIRFNQ DKTGIEEERE DLGYVFRGGL QEPTSVLDAL RSPSPLASHS STTTNTTLSS PHGGGAVTAT ATTTAGDDKC
101: SQIGLDDLDG VISPDQEQSI LRLIMDPGSG FGVLDPGFGF GSGSAPVSDG SNPLLSCGFP FNEQTHQIPN QESLFSNPPS SPPTKRFNSG SHQPSVIIGQ
201: LLNAAELIAT TGDHTILAQG ILARLNHHLS SSSYNNKAPF QRAAFHISEA LLSLIHDAAP PLLTPENLIL RIAAYRTFSE TSPFLQFVNF TANQSILELG
301: FERIHIIDFD VGYGGQWSSL MQELARKRGS CLKVTVFAPP PSTVSDEFEL RFTEENLRSF AGELKIPFEM ELLSLELLLN PAYWPLSLRS SQKEAVAVNL
401: PVSSVVSGYL PLILRFLKQI SPNVVVCSDR GCDRNDAPFP NAVIHALQYH TTLLESLDAN QSQEDSSVER FWVRPSIEKL LVKRHRWIER SPPWRSLFTQ
501: CGFTPASLSQ TAETQAECLM QRNPVRGFHV EKRQSSLVMC WQRKELVTVS AWKC
101: SQIGLDDLDG VISPDQEQSI LRLIMDPGSG FGVLDPGFGF GSGSAPVSDG SNPLLSCGFP FNEQTHQIPN QESLFSNPPS SPPTKRFNSG SHQPSVIIGQ
201: LLNAAELIAT TGDHTILAQG ILARLNHHLS SSSYNNKAPF QRAAFHISEA LLSLIHDAAP PLLTPENLIL RIAAYRTFSE TSPFLQFVNF TANQSILELG
301: FERIHIIDFD VGYGGQWSSL MQELARKRGS CLKVTVFAPP PSTVSDEFEL RFTEENLRSF AGELKIPFEM ELLSLELLLN PAYWPLSLRS SQKEAVAVNL
401: PVSSVVSGYL PLILRFLKQI SPNVVVCSDR GCDRNDAPFP NAVIHALQYH TTLLESLDAN QSQEDSSVER FWVRPSIEKL LVKRHRWIER SPPWRSLFTQ
501: CGFTPASLSQ TAETQAECLM QRNPVRGFHV EKRQSSLVMC WQRKELVTVS AWKC
001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC
Arabidopsis Description
SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.