CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69238	Canola	cytosol	98.36	97.95
AT4G36710.1	Thale cress	cytosol	88.71	88.89
CDX72597	Canola	cytosol	79.88	84.38
CDY43895	Canola	cytosol	72.69	72.1
CDY13032	Canola	cytosol	72.9	72.01
Bra011700.1-P	Field mustard	cytosol	99.79	70.23
KRH28630	Soybean	plastid	54.83	51.74
KRH76844	Soybean	plastid	55.03	51.05
KRH08304	Soybean	plastid	55.65	50.19
KRH69945	Soybean	plastid	53.59	49.9
VIT_04s0023g01380.t01	Wine grape	plastid	53.59	48.51
Solyc02g085600.1.1	Tomato	plastid	49.08	44.59
PGSC0003DMT400033037	Potato	plastid	49.49	44.22
GSMUA_Achr3P29970_001	Banana	cytosol	34.09	31.26
GSMUA_Achr4P07190_001	Banana	plastid	31.62	29.5
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	31.83	29.03
CDX89065	Canola	nucleus	28.34	25.09
CDX95633	Canola	cytosol	28.54	25.09
CDY48367	Canola	cytosol	28.34	24.47
CDY56248	Canola	cytosol	30.18	24.46
CDY67934	Canola	cytosol	29.77	24.25
CDX83398	Canola	cytosol	28.95	23.9
CDY63061	Canola	cytosol, plastid	27.31	23.67
CDY63062	Canola	cytosol, plastid	27.31	23.67
CDY45672	Canola	cytosol	18.69	18.61
CDY17336	Canola	cytosol	18.69	18.24

Protein Annotations

EnsemblPlants:CDX75590	EnsemblPlantsGene:GSBRNA2T00121499001	GO:A0A078CFI0	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF53	PFAM:PF03514	PFscan:PS50985	ProteinID:CDX75590	ProteinID:CDX75590.1	SEG:seg
UniParc:UPI0004EDF749	MapMan:15.5.12	:	:	:	:

Description

BnaA01g01120D

Coordinates

chrLK031804:+:1816201..1817664

Molecular Weight (calculated)

54234.4 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.131

Length

487 amino acids

Sequence
(BLAST)

001: MKVQASSPQD NQPSNTNSTD NNNNNNQLPS MDEHVMRSMD WDSIMKELEL DDDSTPNPLK TEFTTTDSAI GPLYAVDSNL PGFPDQIQPS DFDSSDAYQN
101: QTTGYGFTSL DSVDNGGGFD FVEDLIRVVD CVESDELQLA QVILSRLNQR LRSPAGRPLQ RAAFYFKEAL GSLLTGSNRN QTRLLSSWTE IVQKIRAVKE
201: FSGISPIPLF SHFTANQAIL DSLNSQTSSS PFVHVVDFDV GFGGQYASLM REIAEKSISS GFLRVTAVVA EECAVETRLV KENLTQFAAE MKIRFQIEFV
301: LMKTFEMLSF KAIRFVDGER TVVLISPAIF RRLSGIAEFV TNLRRVSPKV VVFVDSEGWT EIAGAGSFRR EFVTALEFYT MVLESLDAAA PPGDLVKKIV
401: EAFVLRPKIV AAVETAGDRR NVGEMTWREA FCGAGMRSIQ LSQFAIFQAE CLLEKAQVRG FHVAKRQEEL VLCWHGRALV ATSAWRF

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.