Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60630.1 | CDX68289 | AT1G72030.1 | 21798944 |
| AT3G60630.1 | CDY36666 | AT1G72030.1 | 21798944 |
| AT3G60630.1 | CDX82548 | AT3G13227.1 | 21798944 |
| AT3G60630.1 | CDY66552 | AT3G13227.1 | 21798944 |
| AT3G60630.1 | CDY70591 | AT3G13227.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 32.73 | 98.9 |
| CDY48367 | Canola | cytosol | 93.45 | 91.13 |
| AT3G60630.1 | Thale cress | cytosol | 80.36 | 70.95 |
| CDX95633 | Canola | cytosol | 60.0 | 59.57 |
| CDX83398 | Canola | cytosol | 61.09 | 56.95 |
| CDY56248 | Canola | cytosol | 61.09 | 55.91 |
| CDY67934 | Canola | cytosol | 60.36 | 55.52 |
| CDY63062 | Canola | cytosol, plastid | 39.82 | 38.97 |
| CDY63061 | Canola | cytosol, plastid | 39.82 | 38.97 |
| Zm00001d022034_P001 | Maize | cytosol | 21.27 | 38.24 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 48.0 | 34.38 |
| Solyc01g090950.2.1 | Tomato | cytosol | 48.0 | 34.33 |
| KRH75351 | Soybean | cytosol | 46.18 | 34.14 |
| KRH76167 | Soybean | cytosol | 45.64 | 34.06 |
| KRG88927 | Soybean | cytosol | 46.0 | 33.96 |
| KRH65380 | Soybean | cytosol | 44.91 | 33.74 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 47.45 | 33.68 |
| Os10t0551200-01 | Rice | cytosol | 24.0 | 33.17 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 31.09 | 32.39 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 28.0 | 32.29 |
| Zm00001d047957_P001 | Maize | cytosol | 7.45 | 31.78 |
| Os06t0105350-00 | Rice | plastid | 28.18 | 31.7 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 31.82 | 31.59 |
| Zm00001d045589_P001 | Maize | cytosol | 28.36 | 31.2 |
| TraesCS7D01G011400.1 | Wheat | plastid | 29.82 | 30.83 |
| GSMUA_Achr11P... | Banana | cytosol | 33.27 | 30.76 |
| EER87695 | Sorghum | cytosol, plastid | 28.55 | 30.6 |
| TraesCS4A01G482000.1 | Wheat | plastid | 29.64 | 30.02 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 35.27 | 29.09 |
| CDX72597 | Canola | cytosol | 24.36 | 29.07 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 14.91 | 28.67 |
| Zm00001d022162_P001 | Maize | cytosol | 8.55 | 28.48 |
| Zm00001d027292_P001 | Maize | peroxisome | 24.91 | 28.48 |
| CDY13032 | Canola | cytosol | 25.45 | 28.4 |
| HORVU1Hr1G053510.1 | Barley | plastid | 32.0 | 28.39 |
| CDX75590 | Canola | cytosol | 25.09 | 28.34 |
| CDY43895 | Canola | cytosol | 25.27 | 28.31 |
| Os03t0103400-01 | Rice | cytosol | 24.18 | 28.06 |
| TraesCS7A01G014200.1 | Wheat | plastid | 29.64 | 28.06 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 31.64 | 28.02 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 31.82 | 28.0 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 31.64 | 27.88 |
| EER91968 | Sorghum | cytosol, mitochondrion | 32.36 | 27.81 |
| CDX69238 | Canola | cytosol | 24.73 | 27.81 |
| Zm00001d029855_P001 | Maize | mitochondrion | 31.64 | 26.98 |
| GSMUA_Achr11P... | Banana | cytosol | 33.27 | 26.45 |
| Zm00001d027569_P001 | Maize | plastid | 14.73 | 25.88 |
| Zm00001d018956_P001 | Maize | plastid | 6.73 | 25.87 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 29.82 | 25.75 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 30.0 | 25.7 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 30.0 | 25.7 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 32.73 | 25.6 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 32.36 | 25.43 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 29.45 | 25.39 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 32.55 | 25.32 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 32.36 | 25.28 |
| Zm00001d002718_P001 | Maize | cytosol | 32.91 | 25.1 |
| Os04t0555000-01 | Rice | cytosol | 32.18 | 24.89 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 32.55 | 24.86 |
| Os02t0662700-01 | Rice | cytosol | 32.0 | 24.82 |
| Zm00001d026158_P001 | Maize | cytosol | 32.18 | 24.65 |
| Zm00001d051387_P001 | Maize | cytosol | 31.27 | 24.29 |
| Os02t0663100-01 | Rice | cytosol | 31.45 | 24.2 |
| EES05768 | Sorghum | cytosol | 31.45 | 24.16 |
| Zm00001d042852_P001 | Maize | cytosol | 10.18 | 22.76 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 29.09 | 22.66 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 14.55 | 22.6 |
| CDY45672 | Canola | cytosol | 18.18 | 20.45 |
| CDY17336 | Canola | cytosol | 17.82 | 19.64 |
| Zm00001d031615_P001 | Maize | cytosol | 9.64 | 19.49 |
| OQU85680 | Sorghum | mitochondrion | 22.91 | 19.47 |
Protein Annotations
| EnsemblPlants:CDX89065 | EnsemblPlantsGene:GSBRNA2T00149190001 | GO:A0A078DIP1 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF11 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDX89065 | ProteinID:CDX89065.1 | SEG:seg |
| UniParc:UPI0004EE9F25 | MapMan:15.5.12 | : | : | : | : |
Description
BnaA04g01210D
Coordinates
chrLK031857:-:856721..858373
Molecular Weight (calculated)
60293.8 Da
IEP (calculated)
4.441
GRAVY (calculated)
-0.266
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLPFEELQG LGFSYGTRED LCCVVGVNNG SSEPTSVLDS SRSPSPFLSS STTTLSSSHG GPGAAAGKCN QMTFEDLDGV LSGSPGQEQS IFRLIMSDPG
101: SEFTGFDPGS GSDPNPLFGY GFPLDEPPPP PEEEDVKFQI TADPDPDPCF FSGGSSPPAK RLNSGQPVSH HWGFPFSDPG HDPPQKLAGP ESTAVITEQL
201: FNAAAELTGT DNNSPVLAQG ILARLNHNLS NNLNNPKPPF QRAAFYVTES LQSLLQDSQP SPHSLLLKIA AYRAFSETSP FLQFVNFTAN QTILESLDRF
301: DRIHIVDFDV GYGGQWSSLI QELANRSSLS SLKITSFSSP STVSDEFELR FTEENLRAFA GETGVTFEME MLNMETLLNP PLSLIRSSEK EAIAVNLPIS
401: SVISGYLPLI LRFLKQISPN VVVCSDTIPD APFPNAVVDA LQYYTSLLES LESPNSSQEA VTSIERFCVQ PWMQRLLTNR YRWMEKSPPW RSLFGQCGFT
501: AVAMSQTAET QAEYLLQRNP MRGFHLEKRQ SSLVLCWQKR ELVAVSAWKC
101: SEFTGFDPGS GSDPNPLFGY GFPLDEPPPP PEEEDVKFQI TADPDPDPCF FSGGSSPPAK RLNSGQPVSH HWGFPFSDPG HDPPQKLAGP ESTAVITEQL
201: FNAAAELTGT DNNSPVLAQG ILARLNHNLS NNLNNPKPPF QRAAFYVTES LQSLLQDSQP SPHSLLLKIA AYRAFSETSP FLQFVNFTAN QTILESLDRF
301: DRIHIVDFDV GYGGQWSSLI QELANRSSLS SLKITSFSSP STVSDEFELR FTEENLRAFA GETGVTFEME MLNMETLLNP PLSLIRSSEK EAIAVNLPIS
401: SVISGYLPLI LRFLKQISPN VVVCSDTIPD APFPNAVVDA LQYYTSLLES LESPNSSQEA VTSIERFCVQ PWMQRLLTNR YRWMEKSPPW RSLFGQCGFT
501: AVAMSQTAET QAEYLLQRNP MRGFHLEKRQ SSLVLCWQKR ELVAVSAWKC
001: MPLPFEQFQG KGVLGFLDSS SSPGYKIWAN PEKLHGRVEE DLCFVVNNGG FSEPTSVLDS VRSPSPFVSS STTTLSSSHG GPSGGGAAAA TFSGADGKCD
101: QMGFEDLDGV LSGGSPGQEQ SIFRLIMAGD VVDPGSEFVG FDIGSGSDPV IDNPNPLFGY GFPFQNAPEE EKFQISINPN PGFFSDPPSS PPAKRLNSGQ
201: PGSQHLQWVF PFSDPGHESH DPFLTPPKIA GEDQNDQDQS AVIIDQLFSA AAELTTNGGD NNPVLAQGIL ARLNHNLNNN NDDTNNNPKP PFHRAASYIT
301: EALHSLLQDS SLSPPSLSPP QNLIFRIAAY RAFSETSPFL QFVNFTANQT ILESFEGFDR IHIVDFDIGY GGQWASLIQE LAGKRNRSSS APSLKITAFA
401: SPSTVSDEFE LRFTEENLRS FAGETGVSFE IELLNMEILL NPTYWPLSLF RSSEKEAIAV NLPISSMVSG YLPLILRFLK QISPNVVVCS DRSCDRNNDA
501: PFPNGVINAL QYYTSLLESL DSGNLNNAEA ATSIERFCVQ PSIQKLLTNR YRWMERSPPW RSLFGQCGFT PVTLSQTAET QAEYLLQRNP MRGFHLEKRQ
601: SSSPSLVLCW QRKELVTVSA WKC
101: QMGFEDLDGV LSGGSPGQEQ SIFRLIMAGD VVDPGSEFVG FDIGSGSDPV IDNPNPLFGY GFPFQNAPEE EKFQISINPN PGFFSDPPSS PPAKRLNSGQ
201: PGSQHLQWVF PFSDPGHESH DPFLTPPKIA GEDQNDQDQS AVIIDQLFSA AAELTTNGGD NNPVLAQGIL ARLNHNLNNN NDDTNNNPKP PFHRAASYIT
301: EALHSLLQDS SLSPPSLSPP QNLIFRIAAY RAFSETSPFL QFVNFTANQT ILESFEGFDR IHIVDFDIGY GGQWASLIQE LAGKRNRSSS APSLKITAFA
401: SPSTVSDEFE LRFTEENLRS FAGETGVSFE IELLNMEILL NPTYWPLSLF RSSEKEAIAV NLPISSMVSG YLPLILRFLK QISPNVVVCS DRSCDRNNDA
501: PFPNGVINAL QYYTSLLESL DSGNLNNAEA ATSIERFCVQ PSIQKLLTNR YRWMERSPPW RSLFGQCGFT PVTLSQTAET QAEYLLQRNP MRGFHLEKRQ
601: SSSPSLVLCW QRKELVTVSA WKC
Arabidopsis Description
SCL22Scarecrow-like protein 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9M000]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.