CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90674
EER96202
KXG24803

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	EER96202	AT1G72030.1	21798944
AT4G00150.1	KXG24803	AT1G60490.1	21798944
AT4G00150.1	EER90674	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05768	Sorghum	cytosol	87.02	78.63
Zm00001d051387_P001	Maize	cytosol	82.23	75.14
Os02t0663100-01	Rice	cytosol	68.93	62.38
TraesCS6A01G247200.1	Wheat	mitochondrion	66.92	61.51
TraesCS6B01G277400.1	Wheat	mitochondrion	66.31	61.29
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	66.46	61.17
TraesCS6D01G229400.1	Wheat	mitochondrion	66.46	60.82
Os02t0662700-01	Rice	cytosol	66.62	60.79
EES11245	Sorghum	cytosol, nucleus, peroxisome	59.66	53.61
GSMUA_Achr11P...	Banana	cytosol	32.3	35.13
GSMUA_Achr5P20860_001	Banana	cytosol	28.9	33.75
EER91968	Sorghum	cytosol, mitochondrion	33.38	33.75
GSMUA_Achr8P11160_001	Banana	cytosol	31.99	31.03
EER87695	Sorghum	cytosol, plastid	23.8	30.02
GSMUA_Achr11P...	Banana	cytosol	31.68	29.62
VIT_02s0154g00400.t01	Wine grape	cytosol	22.1	27.93
AT4G00150.1	Thale cress	cytosol, plastid	23.96	27.78
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	32.61	27.23
Solyc08g078800.1.1	Tomato	plastid	19.17	26.16
KRH75351	Soybean	cytosol	29.68	25.81
KRG88927	Soybean	cytosol	29.21	25.37
CDX95633	Canola	cytosol	21.64	25.27
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	29.68	25.0
Solyc01g090950.2.1	Tomato	cytosol	29.52	24.84
CDY63061	Canola	cytosol, plastid	21.33	24.56
Bra037319.1-P	Field mustard	cytosol, plastid	21.33	24.56
CDY63062	Canola	cytosol, plastid	21.33	24.56
Bra003311.1-P	Field mustard	nucleus	19.17	24.51
CDY56248	Canola	cytosol	22.72	24.46
CDY67934	Canola	cytosol	22.57	24.41
CDX83398	Canola	cytosol	22.26	24.41
Bra000375.1-P	Field mustard	cytosol	22.87	24.38
KRH76167	Soybean	cytosol	27.2	23.88
KRH65380	Soybean	cytosol	26.89	23.77
PGSC0003DMT400012104	Potato	plastid	25.66	23.71
AT2G45160.1	Thale cress	cytosol	22.87	23.12
CDX89065	Canola	nucleus	19.47	22.91
AT3G60630.1	Thale cress	cytosol	21.95	22.79
CDY48367	Canola	cytosol	19.47	22.34
KXG23028	Sorghum	cytosol	11.75	15.29
OQU92876	Sorghum	cytosol	13.14	15.29
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	3.4	12.09

Protein Annotations

EnsemblPlants:OQU85680	EnsemblPlantsGene:SORBI_3004G291000	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF64	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU85680	ProteinID:OQU85680.1	SEG:seg
UniParc:UPI000B8BA777	UniProt:A0A1Z5RPJ4	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:63201498..63203983

Molecular Weight (calculated)

67023.0 Da

IEP (calculated)

7.009

GRAVY (calculated)

-0.017

Length

647 amino acids

Sequence
(BLAST)

001: MRAALFGAQR SGAADLVGGG RTLLWPEEGK AKAQLEPRSV PDCTRSPSPS NSTSTLSSYM GGGGAADSTG GVAVVSGSSA AAAADAAKWG ASGKHGGGGK
101: EDWAGGCALP PIPTGLDMGV IGGGDSWDAM LGSAAAAGQD QTFLNWIIGA AGDLDQSGPP LPVHQQPLLD NVGFGFPAAD PLGFSLDPHL GGVASDMSSP
201: GAVSHAPNSG GGGGNKASSA FGLFSPESAS LQPPPPPVLF HEGIDTKPPL LGAQPPGRLH QYQHQPTSAT TFFMPIPSFP NHNQQSPLVQ PPPKRHQSIG
301: DDLYLARNRL LPPPAGQGHA FPPLNGPALF QLQPSPPPPH GAMKTTAAEA AQQQLLDELA VAAKAAEAGN SIGAREILAR LNHQLPPLGK PFLRSASYLK
401: EALLLALAEG HHGGCHLTSP LDVALKLAAY KTFSDHSPVL QFTNFTATQA LLDEIAGNTS SCIHVIDFDL AVGGQWASFL QELAHRRGAG GAALPFVKLT
501: AFVSAASHHP LELRLARDNI AQFAADLGIP FEFSAISADT INPTELISAT GDEVVAVVLP AGCSARAPPL PAILRLACSS LIRLMLLALM LILPARLRSS
601: LFSQELRIQC LGGPRWTSQL HGEVHSQLLG SRLFRPAVWL RRRLTAS

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.