CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041919_P001	Maize	cytosol, peroxisome, plastid	76.66	77.44
Os12t0162700-00	Rice	nucleus	30.38	40.92
VIT_04s0044g00620.t01	Wine grape	cytosol	26.76	33.33
KRH43393	Soybean	cytosol	31.19	31.83
Solyc11g005610.1.1	Tomato	cytosol	30.78	31.1
PGSC0003DMT400010158	Potato	cytosol	30.58	30.77
OQU92876	Sorghum	cytosol	27.36	24.46
EER87695	Sorghum	cytosol, plastid	19.11	18.52
EER91968	Sorghum	cytosol, mitochondrion	19.92	15.47
EES05768	Sorghum	cytosol	21.33	14.8
EES11245	Sorghum	cytosol, nucleus, peroxisome	21.33	14.72
OQU85680	Sorghum	mitochondrion	15.29	11.75
Os11t0160600-01	Rice	cytosol	0.4	4.0

Protein Annotations

EnsemblPlants:KXG23028	EnsemblPlantsGene:SORBI_3008G046700	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF55	PFAM:PF03514	PFscan:PS50985	ProteinID:KXG23028	ProteinID:KXG23028.1	SEG:seg
UniParc:UPI00081AE7F1	UniProt:A0A1B6PBA0	MapMan:15.5.12	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:4591222..4596201

Molecular Weight (calculated)

53625.9 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.174

Length

497 amino acids

Sequence
(BLAST)

001: METMSYPYSP LIPFPTQHEQ SSYLLWSPQV LTPLENGNMC DGDADADPSP DQQQQDHELM NMLLQEANVL LLQDELSNGD PSLDGFDQRL GGGQENGNLL
101: LGVQEEFMEE SSLGDLLVAG ARAVESRDAI SASAILSRID AALVSSSDHL ACYFARGLRS RISGECRSTA DDAAAPGNRM PAYRMLQELS PFIKFAHFTA
201: NQAILEATAD DPAVHVVDLN VGEGVQWASL MSDLARRHGS RKRFRLTEAF VTADADAGAA AHRTAGRLLS EFAASLNVPF QYSSLHVRSD EDLHGLATSC
301: CCNCNCNGSD DDSASSSSSV IVSCDTTDQP YSSLTRLQLL LAGSVVRILR PKLVVTTEEE LFRMGRRNPN SFEEFFREAL HHYGAVLESL GSCFRDGGGG
401: GYGACLALVE KEALGPRIQD AVGQYQYQYG HGPLAGGACG VELEGFRACE MSSFSVAQGR MLAALFSRGF GVVHGDGRLA LCWKSRPLTS VSVWSPV

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.