CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90674
EER96202
KXG24803

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	EER96202	AT1G72030.1	21798944
AT4G00150.1	KXG24803	AT1G60490.1	21798944
AT4G00150.1	EER90674	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029855_P001	Maize	mitochondrion	92.19	91.47
Zm00001d022162_P001	Maize	cytosol	22.19	86.06
Zm00001d035873_P001	Maize	cytosol, plastid	37.5	83.92
Zm00001d042852_P001	Maize	cytosol	32.03	83.33
Os10t0551200-01	Rice	cytosol	48.91	78.64
HORVU1Hr1G053510.1	Barley	plastid	74.84	77.26
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	42.66	77.12
TraesCS1B01G223400.1	Wheat	cytosol, plastid	75.16	77.08
TraesCS1D01G212800.1	Wheat	cytosol	74.69	76.97
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	75.16	76.96
Zm00001d047957_P001	Maize	cytosol	15.0	74.42
Zm00001d031615_P001	Maize	cytosol	30.62	72.06
Zm00001d027569_P001	Maize	plastid	33.44	68.37
Zm00001d018956_P001	Maize	plastid	13.91	62.24
GSMUA_Achr11P...	Banana	cytosol	38.59	41.51
EER87695	Sorghum	cytosol, plastid	32.81	40.94
EES11245	Sorghum	cytosol, nucleus, peroxisome	45.78	40.69
EES05768	Sorghum	cytosol	44.53	39.8
GSMUA_Achr5P20860_001	Banana	cytosol	34.38	39.71
GSMUA_Achr8P11160_001	Banana	cytosol	40.0	38.38
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	10.62	37.36
VIT_02s0154g00400.t01	Wine grape	cytosol	28.59	35.74
AT4G00150.1	Thale cress	cytosol, plastid	31.09	35.66
GSMUA_Achr11P...	Banana	cytosol	38.12	35.26
Solyc08g078800.1.1	Tomato	plastid	25.47	34.39
CDY63062	Canola	cytosol, plastid	30.0	34.16
CDY63061	Canola	cytosol, plastid	30.0	34.16
Bra037319.1-P	Field mustard	cytosol, plastid	30.0	34.16
OQU85680	Sorghum	mitochondrion	33.75	33.38
CDX89065	Canola	nucleus	27.81	32.36
CDX95633	Canola	cytosol	27.5	31.77
CDY48367	Canola	cytosol	27.81	31.56
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	37.34	30.84
Bra003311.1-P	Field mustard	nucleus	24.38	30.83
CDX83398	Canola	cytosol	28.28	30.68
AT3G60630.1	Thale cress	cytosol	29.69	30.5
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	36.41	30.34
Solyc01g090950.2.1	Tomato	cytosol	36.25	30.17
CDY67934	Canola	cytosol	28.12	30.1
Bra000375.1-P	Field mustard	cytosol	28.12	29.65
KRH75351	Soybean	cytosol	33.91	29.17
CDY56248	Canola	cytosol	27.34	29.12
KRG88927	Soybean	cytosol	33.44	28.72
PGSC0003DMT400012104	Potato	plastid	31.41	28.71
AT2G45160.1	Thale cress	cytosol	28.12	28.12
KRH76167	Soybean	cytosol	32.34	28.09
KRH65380	Soybean	cytosol	30.94	27.05
KXG23028	Sorghum	cytosol	15.47	19.92
OQU92876	Sorghum	cytosol	15.94	18.35

Protein Annotations

MapMan:15.5.12	EntrezGene:8058755	UniProt:C5WSJ8	EnsemblPlants:EER91968	ProteinID:EER91968	ProteinID:EER91968.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF125	EnsemblPlantsGene:SORBI_3001G304500
unigene:Sbi.6684	InterPro:TF_GRAS	UniParc:UPI0001A8252C	RefSeq:XP_002464970.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:58833880..58837256

Molecular Weight (calculated)

66795.8 Da

IEP (calculated)

6.341

GRAVY (calculated)

0.094

Length

640 amino acids

Sequence
(BLAST)

001: MRGMLFAGSA REGHAGTLLQ QQQQRQGLAA GKVSGAGDLW EPTSVLDHRH SPSPSPPTSV STLSSPLGAA TAGVAALAGA NAKNVSPPPV AAAWPGGGPG
101: EEAVAGGKEE WQLTPLDMGL SAGEGWDAAG AVLSDGAAPP GLAPDHTFLR WIIGGEDASA AMGSVMDPPV LELDHAPSMM SPAFGASMPF APAMEDVKAV
201: PFGHTPNFLV HHHQHHPQPH AAFFGSHSHA SLDAAPQPKR PHPMAGAPAP KLPSFPGPVA QPGGFAPALK PKAEAANDEA TAAVDQLAEA AKLAEAGDAF
301: GAREILARLN YRLPAVPTAG TPLLRSAFYF KEALRVALSP TGEAPAAPVS TPYDVVLKLG AYKAFSEVSP VLQFAHLTCV QAVLDELGGA SRIHVLDFDI
401: GMGEQWASLM QELAQRCPAA TLKVTALVTS ASHHPLELNL IHENLSGFAR ELGVFLQFAV FNIDTLDPAE LVAITSGDAV AVHLPVGSAH VAAMPAVLRL
501: VKRLGAKVVV SVDHGCDRTE LPFATHLFQA FQSCVSLLDS VDAVGADAEA VARIERFLVQ PDVELRVVSR HRASAPPPAW RTVFASAGFV PVQASTFAES
601: QAEALLKRMA LMGFRVEKRG GALCLYWQRG ELVSVSAWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.