Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P21120_001 | |
| GSMUA_Achr3P21890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60630.1 | GSMUA_Achr3P21890_001 | AT1G72030.1 | 21798944 |
| AT4G00150.1 | GSMUA_Achr1P21120_001 | AT1G60490.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P20860_001 | Banana | cytosol | 69.41 | 74.55 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 77.98 | 69.57 |
| GSMUA_Achr11P... | Banana | cytosol | 75.13 | 64.6 |
| Zm00001d022034_P001 | Maize | cytosol | 27.39 | 53.27 |
| Os10t0551200-01 | Rice | cytosol | 33.11 | 49.5 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 38.66 | 48.22 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 42.52 | 47.92 |
| Zm00001d047957_P001 | Maize | cytosol | 9.75 | 44.96 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 20.34 | 42.31 |
| Os04t0555000-01 | Rice | cytosol | 49.58 | 41.49 |
| Zm00001d027292_P001 | Maize | peroxisome | 33.28 | 41.16 |
| VIT_02s0154g00400.t01 | Wine grape | cytosol | 35.29 | 41.02 |
| Os02t0663100-01 | Rice | cytosol | 49.24 | 40.98 |
| Os02t0662700-01 | Rice | cytosol | 48.74 | 40.9 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 48.4 | 40.74 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 47.9 | 40.71 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 48.07 | 40.62 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 49.08 | 40.56 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 47.9 | 40.54 |
| EES05768 | Sorghum | cytosol | 48.74 | 40.5 |
| Zm00001d002718_P001 | Maize | cytosol | 49.08 | 40.5 |
| TraesCS7D01G011400.1 | Wheat | plastid | 36.13 | 40.41 |
| Zm00001d045589_P001 | Maize | cytosol | 33.95 | 40.4 |
| Zm00001d051387_P001 | Maize | cytosol | 48.07 | 40.4 |
| HORVU1Hr1G053510.1 | Barley | plastid | 42.02 | 40.32 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 47.4 | 39.94 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 41.51 | 39.77 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 41.68 | 39.74 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 41.68 | 39.68 |
| Os06t0105350-00 | Rice | plastid | 32.27 | 39.26 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 36.81 | 39.25 |
| EER87695 | Sorghum | cytosol, plastid | 33.61 | 38.99 |
| TraesCS4A01G482000.1 | Wheat | plastid | 35.29 | 38.67 |
| Os03t0103400-01 | Rice | cytosol | 30.76 | 38.61 |
| Zm00001d029855_P001 | Maize | mitochondrion | 41.85 | 38.6 |
| EER91968 | Sorghum | cytosol, mitochondrion | 41.51 | 38.59 |
| Zm00001d026158_P001 | Maize | cytosol | 46.39 | 38.44 |
| Solyc08g078800.1.1 | Tomato | plastid | 30.59 | 38.4 |
| CDY63061 | Canola | cytosol, plastid | 35.97 | 38.08 |
| Bra037319.1-P | Field mustard | cytosol, plastid | 35.97 | 38.08 |
| CDY63062 | Canola | cytosol, plastid | 35.97 | 38.08 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 49.41 | 37.94 |
| Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 11.6 | 37.91 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 40.5 | 37.83 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 40.67 | 37.69 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 40.34 | 37.38 |
| TraesCS7A01G014200.1 | Wheat | plastid | 36.3 | 37.18 |
| Zm00001d018956_P001 | Maize | plastid | 8.91 | 37.06 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 39.66 | 36.99 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 45.88 | 35.55 |
| Solyc01g090950.2.1 | Tomato | cytosol | 45.88 | 35.5 |
| Zm00001d042852_P001 | Maize | cytosol | 14.62 | 35.37 |
| Zm00001d022162_P001 | Maize | cytosol | 9.75 | 35.15 |
| CDX95633 | Canola | cytosol | 32.1 | 34.48 |
| Zm00001d027569_P001 | Maize | plastid | 17.98 | 34.19 |
| PGSC0003DMT400012104 | Potato | plastid | 39.83 | 33.86 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 20.0 | 33.62 |
| KRH75351 | Soybean | cytosol | 41.85 | 33.47 |
| CDY48367 | Canola | cytosol | 31.6 | 33.33 |
| CDX89065 | Canola | nucleus | 30.76 | 33.27 |
| Bra003311.1-P | Field mustard | nucleus | 28.24 | 33.2 |
| KRG88927 | Soybean | cytosol | 41.34 | 33.02 |
| CDY67934 | Canola | cytosol | 32.94 | 32.78 |
| KRH76167 | Soybean | cytosol | 40.5 | 32.7 |
| AT3G60630.1 | Thale cress | cytosol | 34.12 | 32.58 |
| AT2G45160.1 | Thale cress | cytosol | 34.96 | 32.5 |
| CDY56248 | Canola | cytosol | 32.77 | 32.45 |
| OQU85680 | Sorghum | mitochondrion | 35.13 | 32.3 |
| CDX83398 | Canola | cytosol | 31.93 | 32.2 |
| Zm00001d031615_P001 | Maize | cytosol | 14.62 | 31.99 |
| KRH65380 | Soybean | cytosol | 39.33 | 31.97 |
| Bra000375.1-P | Field mustard | cytosol | 32.44 | 31.8 |
| GSMUA_Achr3P29970_001 | Banana | cytosol | 26.89 | 30.13 |
| GSMUA_Achr4P07190_001 | Banana | plastid | 23.7 | 27.01 |
| GSMUA_Achr4P03460_001 | Banana | cytosol, plastid | 23.87 | 26.59 |
| GSMUA_Achr1P26740_001 | Banana | cytosol | 19.16 | 21.55 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P04360_001 | EnsemblPlants:GSMUA_Achr11T04360_001 | EnsemblPlantsGene:GSMUA_Achr11G04360_001 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF52 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI0002964A95 |
| UniProt:M0RPB6 | MapMan:15.5.12 | : | : | : | : |
Description
Putative Scarecrow-like protein 6 [Source:GMGC_GENE;Acc:GSMUA_Achr11G04360_001]
Coordinates
chr11:+:3223097..3225709
Molecular Weight (calculated)
64687.3 Da
IEP (calculated)
6.164
GRAVY (calculated)
-0.121
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGLPFNGQG KGGLEAVGTI LEGNQALFWV NKRPKFVIQE GVEPRSVLDH RSPSPPTSTA TLSSSLGGGG SSDTAGGGGG AAGKEEWAAE LQPIPAGLDM
101: GFVAGGEKCG VGVDDWEAML SETSAASPSR EQTFLRWIMG DVDDPSAAGF KQQHHQQLLS QAPPDLDGNN GGLGFGILDP CIGLGSIGRI ADDASDKPQL
201: FGPGLLNQPP ATPNPPFFLS VGQVDHQQLP HLLIPNQPKP MAAQQQLQQA LVNLLFEAAE MVEARNFSGA HAILARLNHQ LPSPLGKPLI RSAFYFKEAL
301: QLILSNGPNP LSAYKAFSEV SPIIQFANFT CIQALLEELN GSDRIHIVDS DIGFGGQWSS FMQELAQRRC STAGAVRMLK ITALLPHYPH NNLELHLVRD
401: NLSHFASDLN IPFEFNIHSL DSFDPSELLG LGGEAIAVNL PVGSANFPFP ALFRLVKQLS PKIVVSVDQG CDRSDLPFLQ HFLHAFKSSL VLMDSIDASG
501: TNQDMACKIE KFLLQPRIES SVLGRYHAAD KMLPWRTLFT NTGFVPLQFS NFTETQAECL LKRVQVRGFH VEKRQASLYL YWQRKELVSV SAWRC
101: GFVAGGEKCG VGVDDWEAML SETSAASPSR EQTFLRWIMG DVDDPSAAGF KQQHHQQLLS QAPPDLDGNN GGLGFGILDP CIGLGSIGRI ADDASDKPQL
201: FGPGLLNQPP ATPNPPFFLS VGQVDHQQLP HLLIPNQPKP MAAQQQLQQA LVNLLFEAAE MVEARNFSGA HAILARLNHQ LPSPLGKPLI RSAFYFKEAL
301: QLILSNGPNP LSAYKAFSEV SPIIQFANFT CIQALLEELN GSDRIHIVDS DIGFGGQWSS FMQELAQRRC STAGAVRMLK ITALLPHYPH NNLELHLVRD
401: NLSHFASDLN IPFEFNIHSL DSFDPSELLG LGGEAIAVNL PVGSANFPFP ALFRLVKQLS PKIVVSVDQG CDRSDLPFLQ HFLHAFKSSL VLMDSIDASG
501: TNQDMACKIE KFLLQPRIES SVLGRYHAAD KMLPWRTLFT NTGFVPLQFS NFTETQAECL LKRVQVRGFH VEKRQASLYL YWQRKELVSV SAWRC
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.