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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, nucleus, cytosol

Predictor Summary:
  • mitochondrion 2
  • cytosol 1
  • nucleus 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
iPSORT:mitochondrion
MultiLoc:cytosol
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G013230.1
HORVU5Hr1G039960.1
HORVU6Hr1G023720.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 HORVU5Hr1G039960.1 AT1G72030.1 21798944
AT3G60630.1 HORVU6Hr1G023720.1 AT1G72030.1 21798944
AT4G00150.1 HORVU5Hr1G013230.1 AT1G60490.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G247200.1 Wheat mitochondrion 96.3 96.16
TraesCS6B01G277400.1 Wheat mitochondrion 95.59 96.0
TraesCS6D01G229400.1 Wheat mitochondrion 96.16 95.62
Os02t0663100-01 Rice cytosol 79.09 77.76
Os02t0662700-01 Rice cytosol 76.81 76.16
Zm00001d051387_P001 Maize cytosol 76.24 75.71
EES05768 Sorghum cytosol 76.53 75.14
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 71.69 71.39
OQU85680 Sorghum mitochondrion 61.17 66.46
GSMUA_Achr11P... Banana cytosol 40.54 47.9
HORVU1Hr1G053510.1 Barley plastid 40.11 45.48
GSMUA_Achr5P20860_001 Banana cytosol 35.14 44.58
VIT_02s0154g00400.t01 Wine grape cytosol 30.01 41.21
GSMUA_Achr8P11160_001 Banana cytosol 38.98 41.08
HORVU4Hr1G087700.2 Barley cytosol, mitochondrion, peroxisome, plastid 37.13 40.91
GSMUA_Achr11P... Banana cytosol 39.26 39.88
AT4G00150.1 Thale cress cytosol, plastid 30.58 38.53
Solyc08g078800.1.1 Tomato plastid 25.18 37.34
CDY63062 Canola cytosol, plastid 29.59 37.01
CDY63061 Canola cytosol, plastid 29.59 37.01
Bra037319.1-P Field mustard cytosol, plastid 29.59 37.01
Bra003311.1-P Field mustard nucleus 25.46 35.38
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 38.98 35.35
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 8.96 34.62
CDX95633 Canola cytosol 27.17 34.48
CDY67934 Canola cytosol 28.88 33.95
CDY56248 Canola cytosol 28.73 33.61
KRG88927 Soybean cytosol 35.56 33.56
KRH75351 Soybean cytosol 35.42 33.47
CDX83398 Canola cytosol 28.02 33.39
Solyc01g090950.2.1 Tomato cytosol 35.99 32.9
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 35.85 32.81
CDX89065 Canola nucleus 25.6 32.73
Bra000375.1-P Field mustard cytosol 28.16 32.62
AT2G45160.1 Thale cress cytosol 29.3 32.19
CDY48367 Canola cytosol 25.46 31.74
KRH76167 Soybean cytosol 32.86 31.34
PGSC0003DMT400012104 Potato plastid 31.01 31.14
AT3G60630.1 Thale cress cytosol 27.45 30.98
KRH65380 Soybean cytosol 32.01 30.74
HORVU4Hr1G020490.26 Barley cytosol 15.36 22.78
HORVU4Hr1G061310.1 Barley cytosol, mitochondrion, plastid 16.07 18.65
Protein Annotations
EnsemblPlants:HORVU6Hr1G063650.1EnsemblPlantsGene:HORVU6Hr1G063650GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636
PANTHER:PTHR31636:SF64PFAM:PF03514PFscan:PS50985SEG:segUniParc:UPI000B47AA25UniProt:A0A287UEX8
MapMan:15.5.12:::::
Description
No Description!
Coordinates
chrchr6H:-:430342265..430345365
Molecular Weight (calculated)
73542.5 Da
IEP (calculated)
6.350
GRAVY (calculated)
-0.019
Length
703 amino acids
Sequence
(BLAST)
001: MRAALLGAER SGGGGGVGLG KDLCYWPPGK LLVEPRSVLD CSRRLSSPPN SAASTLSSSL GGGAADSTGV AAVSESSAGD AEATKWPDHG GGGGGCELPP
101: IPGALDGGEG WDAMLGSAAA AAAAGQDQTF LNWIMGAAGD LELPVPPLPM HQQPLVDNAG FGFSPVDPLG FSLDHHLGGA SSDLSSSGAM SHTTTGGGGG
201: GGSKASSAFG LFSPEAASLQ PPPPPMLFHE GIDTKPPLLG AHSHGLFNQY QHQHQPPPPA ATFFMPLSSF SDHNQRSQLH QPPPKRHHSV PDDLYLTRNH
301: LGPSAAATFP LLHGALPFQL QPSSPPLRGA MKTTAAEAAQ QQLLDELAAA AKAAEAGNST GAREILARLN HQLPPLGKPF LRSASYLREA LLLALADGHH
401: GAPRITSPLD VALKLAAYKS FSDLSPMLQF ANFTATQALL DEIACSAASC IHVIDFDLGV GGQWASFLQE LAHRRGTGGV ALPLLKLTAF VSDASHHPLE
501: LHLTRDNLTQ FAADLGTPFE FNAVSLDAFS PAELISPTGD EIVAVSLPVG CSARAPPLAL ILQLVKQLGP KIVVAMDYGA DRADLPFSQH FLHCFQSCMF
601: LLDSLDAAGI DADSACKIEK FLIQPRVEDA VLGRRKTDKA MSWRNVFAAA GFTPVPLSNL AEAQADCLLK RVQVRGFHVE KRGVALTLYW QRGELVSVSA
701: WRC
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.