Factsheet for TraesCS6A01G247200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G054400.1
TraesCS5A01G124000.1
TraesCS5B01G062000.3
TraesCS5B01G123600.1
TraesCS5D01G065700.1
TraesCS5D01G131900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	TraesCS5A01G124000.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5B01G123600.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5D01G131900.1	AT1G72030.1	21798944
AT4G00150.1	TraesCS5A01G054400.1	AT1G60490.1	21798944
AT4G00150.1	TraesCS5B01G062000.3	AT1G60490.1	21798944
AT4G00150.1	TraesCS5D01G065700.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G277400.1	Wheat	mitochondrion	98.01	98.57
TraesCS6D01G229400.1	Wheat	mitochondrion	98.44	98.02
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	96.16	96.3
Os02t0663100-01	Rice	cytosol	80.26	79.02
Os02t0662700-01	Rice	cytosol	78.12	77.57
Zm00001d051387_P001	Maize	cytosol	76.42	75.99
EES05768	Sorghum	cytosol	76.99	75.7
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	72.02	71.81
OQU85680	Sorghum	mitochondrion	61.51	66.92
GSMUA_Achr11P...	Banana	cytosol	40.62	48.07
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	40.34	45.44
GSMUA_Achr5P20860_001	Banana	cytosol	35.51	45.13
TraesCS4A01G482000.1	Wheat	plastid	33.81	43.83
GSMUA_Achr8P11160_001	Banana	cytosol	39.91	42.13
TraesCS7A01G014200.1	Wheat	plastid	34.38	41.65
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	37.64	41.6
VIT_02s0154g00400.t01	Wine grape	cytosol	29.97	41.21
GSMUA_Achr11P...	Banana	cytosol	39.77	40.46
AT4G00150.1	Thale cress	cytosol, plastid	31.11	39.25
Solyc08g078800.1.1	Tomato	plastid	25.43	37.76
CDY63062	Canola	cytosol, plastid	29.97	37.54
CDY63061	Canola	cytosol, plastid	29.97	37.54
Bra037319.1-P	Field mustard	cytosol, plastid	29.97	37.54
Bra003311.1-P	Field mustard	nucleus	25.57	35.57
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.06	35.48
CDX95633	Canola	cytosol	27.41	34.84
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	8.95	34.62
CDY67934	Canola	cytosol	29.12	34.28
CDY56248	Canola	cytosol	29.12	34.11
KRG88927	Soybean	cytosol	35.8	33.83
KRH75351	Soybean	cytosol	35.65	33.74
CDX83398	Canola	cytosol	28.12	33.56
Bra000375.1-P	Field mustard	cytosol	28.41	32.95
Solyc01g090950.2.1	Tomato	cytosol	35.8	32.77
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	35.65	32.68
AT2G45160.1	Thale cress	cytosol	29.69	32.66
CDX89065	Canola	nucleus	25.28	32.36
KRH76167	Soybean	cytosol	32.95	31.48
PGSC0003DMT400012104	Potato	plastid	31.25	31.43
CDY48367	Canola	cytosol	25.14	31.38
AT3G60630.1	Thale cress	cytosol	27.7	31.3
KRH65380	Soybean	cytosol	32.1	30.87
TraesCS4A01G209800.1	Wheat	cytosol	15.77	23.42
TraesCS4A01G088500.1	Wheat	cytosol	16.34	20.5

Protein Annotations

EnsemblPlants:TraesCS6A01G247200.1	EnsemblPlantsGene:TraesCS6A01G247200	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF64
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr6A:-:459074902..459077080

Molecular Weight (calculated)

73499.4 Da

IEP (calculated)

6.270

GRAVY (calculated)

0.014

Length

704 amino acids

Sequence
(BLAST)

001: MRAALFGAER SGGVGLAGGK DLCYWPPGKL LVEPRSVLDC SRRLSSPPNS ASTLSSSLGG GAADSTGVAA VSESSAGDAE ATKWADHAAG GGGGGCELPP
101: IPGALDGGEG WDAMLGSAAA AAAAGQDQTF LNWIMGAAGD LELPVPPLPM HQQPLVDNAG GFGFSAVDPL GFSLDHHLGG ASSDLSSSGA MSHTTTGGGG
201: GGGSKASSAF GLFSPEAASL QPPPPPILFH EGIDTKPPLL GPQSHGLFNQ YQQQHQPPPP AAAFFMPLAS FSDHNQRSQL HQPPPKRHHS VPDDLYLTRN
301: HLGTSAAAAF PLLHGSLPFQ LQPSPPPLRG AMKTTAAEAA QQQLLDELAA AAKAAEAGNS TGAREILARL NHQLPPLGKP FLRSASYLRE ALLLALADGH
401: HGASRITSPL DVALKLAAYK SFSDLSPMLQ FANFTATQAL LDEIACSAAS CIHVIDFDLG VGGQWASFLQ ELAHRRGTGG VALPLLKLTA FVSDASHHPL
501: ELHLTQDNLT QFAADLGIPF EFNAVSLDAF SPAELISSTG DEIVAVSLPV GCSARAPPLA VILRLVKQLG PKIVVAMDYG ADRADLPFSQ HFLHCFQSCM
601: FLLDSLDAAG IDADSACKIE KFLIQPRVED AVLGRRKTDK AVSWRNVFAA AGFTPVPLSN LAEAQADCLL KRVQVRGFHV EKRGVALTLY WQRGELVSVS
701: AWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.