Factsheet for TraesCS5A01G535000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G054400.1
TraesCS5A01G124000.1
TraesCS5B01G062000.3
TraesCS5B01G123600.1
TraesCS5D01G065700.1
TraesCS5D01G131900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	TraesCS5A01G124000.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5B01G123600.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5D01G131900.1	AT1G72030.1	21798944
AT4G00150.1	TraesCS5A01G054400.1	AT1G60490.1	21798944
AT4G00150.1	TraesCS5B01G062000.3	AT1G60490.1	21798944
AT4G00150.1	TraesCS5D01G065700.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G360200.1	Wheat	cytosol	97.17	96.42
TraesCS4B01G367300.1	Wheat	cytosol	95.92	95.17
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	91.05	90.91
Zm00001d027292_P001	Maize	peroxisome	52.59	69.65
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	59.97	61.12
Os03t0103400-01	Rice	cytosol	44.58	59.92
GSMUA_Achr11P...	Banana	cytosol	37.83	40.5
TraesCS4A01G482000.1	Wheat	plastid	34.22	40.15
GSMUA_Achr5P20860_001	Banana	cytosol	33.75	38.81
VIT_02s0154g00400.t01	Wine grape	cytosol	30.61	38.09
TraesCS6A01G247200.1	Wheat	mitochondrion	41.6	37.64
GSMUA_Achr8P11160_001	Banana	cytosol	38.93	37.18
TraesCS7A01G014200.1	Wheat	plastid	33.44	36.66
Solyc08g078800.1.1	Tomato	plastid	26.69	35.87
GSMUA_Achr11P...	Banana	cytosol	37.99	34.97
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	9.89	34.62
AT4G00150.1	Thale cress	cytosol, plastid	29.67	33.87
CDY63062	Canola	cytosol, plastid	28.41	32.21
CDY63061	Canola	cytosol, plastid	28.41	32.21
Bra037319.1-P	Field mustard	cytosol, plastid	28.41	32.21
Bra003311.1-P	Field mustard	nucleus	24.96	31.42
CDX95633	Canola	cytosol	27.0	31.05
CDY67934	Canola	cytosol	28.26	30.1
Solyc01g090950.2.1	Tomato	cytosol	36.26	30.04
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	36.11	29.95
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	36.42	29.94
CDX83398	Canola	cytosol	27.63	29.83
CDX89065	Canola	nucleus	25.75	29.82
KRG88927	Soybean	cytosol	34.07	29.13
CDY48367	Canola	cytosol	25.75	29.08
Bra000375.1-P	Field mustard	cytosol	27.63	29.0
CDY56248	Canola	cytosol	27.32	28.95
KRH75351	Soybean	cytosol	33.59	28.76
AT3G60630.1	Thale cress	cytosol	28.1	28.73
KRH76167	Soybean	cytosol	32.97	28.49
AT2G45160.1	Thale cress	cytosol	28.26	28.12
KRH65380	Soybean	cytosol	32.03	27.87
PGSC0003DMT400012104	Potato	plastid	30.3	27.57
TraesCS4A01G209800.1	Wheat	cytosol	17.27	23.21
TraesCS4A01G088500.1	Wheat	cytosol	17.11	19.43

Protein Annotations

EnsemblPlants:TraesCS5A01G535000.1	EnsemblPlantsGene:TraesCS5A01G535000	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF34
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr5A:-:691834107..691836020

Molecular Weight (calculated)

67314.2 Da

IEP (calculated)

6.430

GRAVY (calculated)

-0.057

Length

637 amino acids

Sequence
(BLAST)

001: MPTQQLTTFQ LLPPAHAHGD RRLHHHQQLA CGGGLWDPAS VLDRRASPAA HPTLSSPSPL PAGVAALAKN VSAAPPAQAQ AWPPPPPGPG ANDDDAKDDW
101: VHHLPPLDMA GWGDPHAAAM QEPHPPPSSQ DSTFLRWIIG GGDDDDDDSG AAMDGTDPPD LDLDRITMLP RHPPPLMGGA GHGLPFTLAG EDTKQPFRAS
201: PGAALHQQQH HLPHAFHGGA FPSFDPAAPA KRQQQQHPMA GAAPPKLPPF AGHGAAAALK PKAEAPVDDG AAAAAVDQLT EAARLVEAGD AYGAREILAR
301: LNHRLPAAPA AGTPLLRSAF YFKEALSVAL DTTGAHASSA AVASTPVDVL LKLGAYKAFS ELSPVLQFAH FTCVQAVLDE LGGAGCIHVL DFDIGVGEQW
401: ASLMQELAQR RPGAALKVTA LVLPSTHHPL ELQLIHENLA NFAAELGVPF QFVVFNLDSV DPTELLAIAG GDAIAVHLPV GSVHAAAVPS VLHLVRRLGA
501: KLVISVDRSG DRGELPFAAH LLQAFQSCAF LLESLDAVGT EPDVASKIER FLIQPKIESC VMRRHQAAAA GDKLLPWRTM FTSAGFVPVH ISNFAEAQAD
601: SLLKKVPVRG FRVEKRAGSL VLHWQRAELV WVSAWRC

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.