Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037319.1-P | Field mustard | cytosol, plastid | 75.09 | 74.56 |
| CDY63061 | Canola | cytosol, plastid | 74.91 | 74.38 |
| CDY63062 | Canola | cytosol, plastid | 74.91 | 74.38 |
| Zm00001d022034_P001 | Maize | cytosol | 25.09 | 45.75 |
| Os10t0551200-01 | Rice | cytosol | 29.93 | 41.96 |
| AT3G60630.1 | Thale cress | cytosol | 46.59 | 41.73 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 57.71 | 41.55 |
| AT2G45160.1 | Thale cress | cytosol | 47.13 | 41.09 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 55.02 | 39.97 |
| Solyc01g090950.2.1 | Tomato | cytosol | 54.3 | 39.4 |
| KRH75351 | Soybean | cytosol | 51.97 | 38.98 |
| KRH76167 | Soybean | cytosol | 51.43 | 38.94 |
| KRH65380 | Soybean | cytosol | 50.36 | 38.39 |
| KRG88927 | Soybean | cytosol | 51.08 | 38.26 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 37.1 | 37.36 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 34.95 | 36.93 |
| GSMUA_Achr11P... | Banana | cytosol | 39.25 | 36.81 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 31.18 | 36.48 |
| Zm00001d027292_P001 | Maize | peroxisome | 30.29 | 35.14 |
| Zm00001d045589_P001 | Maize | cytosol | 31.36 | 35.0 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 17.92 | 34.97 |
| EER87695 | Sorghum | cytosol, plastid | 31.72 | 34.5 |
| Zm00001d047957_P001 | Maize | cytosol | 7.89 | 34.11 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 39.43 | 32.98 |
| Os06t0105350-00 | Rice | plastid | 28.85 | 32.92 |
| HORVU1Hr1G053510.1 | Barley | plastid | 36.38 | 32.74 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 36.38 | 32.69 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 36.56 | 32.64 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 36.38 | 32.53 |
| Os03t0103400-01 | Rice | cytosol | 27.6 | 32.49 |
| GSMUA_Achr11P... | Banana | cytosol | 39.43 | 31.79 |
| TraesCS7D01G011400.1 | Wheat | plastid | 30.29 | 31.77 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 39.61 | 31.26 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 39.07 | 31.14 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 39.25 | 31.11 |
| EER91968 | Sorghum | cytosol, mitochondrion | 35.66 | 31.09 |
| Zm00001d026158_P001 | Maize | cytosol | 39.96 | 31.06 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 39.96 | 30.97 |
| TraesCS4A01G482000.1 | Wheat | plastid | 30.11 | 30.94 |
| Zm00001d002718_P001 | Maize | cytosol | 39.96 | 30.93 |
| Os02t0662700-01 | Rice | cytosol | 39.07 | 30.75 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 38.53 | 30.58 |
| Zm00001d029855_P001 | Maize | mitochondrion | 35.3 | 30.54 |
| Os04t0555000-01 | Rice | cytosol | 38.71 | 30.38 |
| Os02t0663100-01 | Rice | cytosol | 38.89 | 30.35 |
| Zm00001d051387_P001 | Maize | cytosol | 37.81 | 29.8 |
| EES05768 | Sorghum | cytosol | 38.17 | 29.75 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 33.87 | 29.67 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 33.87 | 29.44 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 33.69 | 29.28 |
| TraesCS7A01G014200.1 | Wheat | plastid | 30.47 | 29.26 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 32.97 | 28.84 |
| AT4G36710.1 | Thale cress | cytosol | 24.55 | 28.19 |
| Zm00001d042852_P001 | Maize | cytosol | 12.37 | 28.05 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 35.48 | 28.05 |
| Zm00001d018956_P001 | Maize | plastid | 7.17 | 27.97 |
| Zm00001d022162_P001 | Maize | cytosol | 8.24 | 27.88 |
| Zm00001d027569_P001 | Maize | plastid | 15.05 | 26.84 |
| OQU85680 | Sorghum | mitochondrion | 27.78 | 23.96 |
| Zm00001d031615_P001 | Maize | cytosol | 11.65 | 23.9 |
| AT4G08250.1 | Thale cress | cytosol | 20.07 | 23.19 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 14.52 | 22.88 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:828208 | ProteinID:AAC19296.1 | ProteinID:ACB31517.1 | ProteinID:ACB31518.1 | ProteinID:ACB31519.1 |
| ProteinID:ACB31520.1 | ProteinID:ACB31521.1 | ProteinID:ACB31522.1 | ProteinID:ACB31523.1 | ProteinID:ACB31524.1 | ProteinID:ACB31525.1 |
| ProteinID:ACB31526.1 | ProteinID:ACB31527.1 | ProteinID:ACB31528.1 | ProteinID:ACB31529.1 | ProteinID:ACB31530.1 | ProteinID:ACB31531.1 |
| ProteinID:ACB31532.1 | ProteinID:ACB31533.1 | ProteinID:ACB31534.1 | ProteinID:ACB31535.1 | ProteinID:ACB31536.1 | ProteinID:ACB31537.1 |
| ProteinID:ACB31538.1 | ProteinID:ACB31539.1 | ProteinID:AEE81829.1 | EMBL:AF036303 | EMBL:AF462831 | ArrayExpress:AT4G00150 |
| EnsemblPlantsGene:AT4G00150 | RefSeq:AT4G00150 | TAIR:AT4G00150 | RefSeq:AT4G00150-TAIR-G | EnsemblPlants:AT4G00150.1 | TAIR:AT4G00150.1 |
| EMBL:AY133537 | ProteinID:CAB80773.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0030154 | GO:GO:0040007 | GO:GO:0043565 | GO:GO:0048768 | GO:GO:0051301 | Symbol:HAM3 |
| InterPro:IPR005202 | RefSeq:NP_191926.1 | UniProt:O81316 | PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000014 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF11 | InterPro:TF_GRAS | UniParc:UPI00000A71BD |
| SEG:seg | : | : | : | : | : |
Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
Coordinates
chr4:-:57140..59495
Molecular Weight (calculated)
61171.1 Da
IEP (calculated)
5.656
GRAVY (calculated)
-0.181
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.