Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002894.1-P | Field mustard | cytosol | 76.19 | 76.83 |
| CDY45672 | Canola | cytosol | 76.19 | 75.26 |
| CDY17336 | Canola | cytosol | 76.19 | 73.75 |
| VIT_18s0001g03310.t01 | Wine grape | cytosol | 56.11 | 55.31 |
| KRH53205 | Soybean | cytosol | 53.0 | 51.72 |
| KRH64716 | Soybean | cytosol | 53.42 | 51.39 |
| PGSC0003DMT400031475 | Potato | cytosol | 51.55 | 50.2 |
| Solyc11g013150.1.1 | Tomato | cytosol | 49.48 | 49.08 |
| KRH18776 | Soybean | cytosol | 45.55 | 46.61 |
| GSMUA_Achr1P26740_001 | Banana | cytosol | 43.89 | 40.08 |
| Os03t0263300-01 | Rice | cytosol | 44.1 | 37.04 |
| TraesCS4D01G216200.1 | Wheat | cytosol | 42.65 | 36.72 |
| TraesCS4B01G215700.1 | Wheat | cytosol | 42.65 | 36.72 |
| TraesCS4A01G088500.1 | Wheat | cytosol | 42.65 | 36.72 |
| Zm00001d028526_P001 | Maize | cytosol | 42.03 | 35.99 |
| OQU92876 | Sorghum | cytosol | 41.41 | 35.97 |
| HORVU4Hr1G061310.1 | Barley | cytosol, mitochondrion, plastid | 43.06 | 34.32 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 23.19 | 20.07 |
| AT4G36710.1 | Thale cress | cytosol | 19.46 | 19.34 |
| AT3G60630.1 | Thale cress | cytosol | 22.36 | 17.34 |
| AT2G45160.1 | Thale cress | cytosol | 21.74 | 16.41 |
Protein Annotations
| MapMan:15.5.12 | MapMan:26.9.1.6.2 | EntrezGene:826375 | ProteinID:AEE82614.1 | ArrayExpress:AT4G08250 | EnsemblPlantsGene:AT4G08250 |
| RefSeq:AT4G08250 | TAIR:AT4G08250 | RefSeq:AT4G08250-TAIR-G | EnsemblPlants:AT4G08250.1 | TAIR:AT4G08250.1 | Unigene:At.50325 |
| EMBL:BT011797 | ProteinID:CAB45795.1 | ProteinID:CAB81161.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_192565.1 | PFAM:PF03514 | PO:PO:0000293 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF25 | UniProt:Q9SUF5 | InterPro:SCL26/NSP2 | InterPro:TF_GRAS |
| UniParc:UPI00000A7C50 | : | : | : | : | : |
Description
SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
Coordinates
chr4:+:5196787..5198238
Molecular Weight (calculated)
53541.3 Da
IEP (calculated)
5.004
GRAVY (calculated)
-0.147
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.