Factsheet for Os03t0263300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G215700.1	Wheat	cytosol	81.74	83.78
TraesCS4D01G216200.1	Wheat	cytosol	81.39	83.42
TraesCS4A01G088500.1	Wheat	cytosol	81.39	83.42
OQU92876	Sorghum	cytosol	79.13	81.83
Zm00001d028526_P001	Maize	cytosol	79.83	81.38
HORVU4Hr1G061310.1	Barley	cytosol, mitochondrion, plastid	82.43	78.22
GSMUA_Achr1P26740_001	Banana	cytosol	54.96	59.74
VIT_18s0001g03310.t01	Wine grape	cytosol	49.22	57.76
KRH53205	Soybean	cytosol	47.65	55.35
PGSC0003DMT400031475	Potato	cytosol	47.13	54.64
KRH64716	Soybean	cytosol	47.3	54.18
Solyc11g013150.1.1	Tomato	cytosol	45.57	53.8
KRH18776	Soybean	cytosol	42.09	51.27
Bra002894.1-P	Field mustard	cytosol	38.61	46.35
CDY45672	Canola	cytosol	38.61	45.4
CDY17336	Canola	cytosol	38.78	44.69
AT4G08250.1	Thale cress	cytosol	37.04	44.1
Os11t0160550-00	Rice	cytosol	22.43	27.98
Os10t0551200-01	Rice	cytosol	16.87	24.37
Os03t0103400-01	Rice	cytosol	18.61	22.57
Os06t0105350-00	Rice	plastid	17.57	20.65
Os12t0162700-00	Rice	nucleus	11.65	18.16
Os02t0662700-01	Rice	cytosol	19.3	15.66
Os04t0555000-01	Rice	cytosol	19.13	15.47
Os02t0663100-01	Rice	cytosol	19.13	15.38
Os11t0160600-01	Rice	cytosol	0.17	2.0

Protein Annotations

EntrezGene:107276070	MapMan:15.5.12	MapMan:26.9.1.6.2	ProteinID:AAP06856.1	ProteinID:ABF95108.1	ProteinID:BAS83378.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
EnsemblPlantsGene:Os03g0263300	EnsemblPlants:Os03t0263300-01	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF25
UniProt:Q84Q92	InterPro:SCL26/NSP2	InterPro:TF_GRAS	UniParc:UPI000018DBFE	RefSeq:XP_015630025.1	SEG:seg

Description

NODULATION SIGNALING PATHWAY 2GRAS-domain transcription factor, Strigolactone (SL) biosynthesis (Os03t0263300-01)

Coordinates

chr3:+:8651497..8653224

Molecular Weight (calculated)

60851.6 Da

IEP (calculated)

4.857

GRAVY (calculated)

-0.106

Length

575 amino acids

Sequence
(BLAST)

001: MEVTMEDVAG DFEFSGCGST TTTSSASSLD DGTGMCYAWG ELSPVADWAN FCCSDDDGGH DLHGLIESML CDDTLVGVDD DGQAGLHHAD MFRDDLYCYG
101: NGSNPSSTTT TNPGSPVFDD PTQGCPEKGL RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSHTASA NAAASNMERL AAHFTDALQG LLDGSHPVGG
201: SGRQAAAAAS HHHAGDVLTA FQMLQDMSPY MKFGHFTANQ AILEAVSGDR RVHIVDYDIA EGIQWASLMQ AMTSRADGVP APHLRITAVS RSGGGGARAV
301: QEAGRRLSAF AASIGQPFSF GQCRLDSDER FRPATVRMVK GEALVANCVL HQAAATTTIR RPTGSVASFL SGMAALGAKL VTVVEEEGEA EKDDDGDSAG
401: DAAAGGFVRQ FMEELHRYSA VWDSLEAGFP TQSRVRGLVE RVILAPNIAG AVSRAYRGVD GEGRCGWGQW MRGSGFTAVP LSCFNHSQAR LLLGLFNDGY
501: TVEETGPNKI VLGWKARRLM SASVWAPPPL PVPSSPPEGV CQPVVGMAPV ATGGFARTEF DYIDSFLVEP AYALV

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.