CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53205	Soybean	cytosol	88.45	89.7
VIT_18s0001g03310.t01	Wine grape	cytosol	70.72	72.45
PGSC0003DMT400031475	Potato	cytosol	64.74	65.52
Solyc11g013150.1.1	Tomato	cytosol	62.75	64.68
KRH18776	Soybean	cytosol	60.56	64.41
AT4G08250.1	Thale cress	cytosol	51.39	53.42
Bra002894.1-P	Field mustard	cytosol	50.8	53.24
CDY45672	Canola	cytosol	51.0	52.35
CDY17336	Canola	cytosol	51.2	51.5
GSMUA_Achr1P26740_001	Banana	cytosol	54.18	51.42
TraesCS4D01G216200.1	Wheat	cytosol	53.19	47.59
TraesCS4B01G215700.1	Wheat	cytosol	53.19	47.59
TraesCS4A01G088500.1	Wheat	cytosol	53.19	47.59
Zm00001d028526_P001	Maize	cytosol	53.19	47.34
Os03t0263300-01	Rice	cytosol	54.18	47.3
OQU92876	Sorghum	cytosol	51.79	46.76
HORVU4Hr1G061310.1	Barley	cytosol, mitochondrion, plastid	52.79	43.73
KRH43393	Soybean	cytosol	31.08	32.03
KRH28630	Soybean	plastid	22.31	21.71
KRH76844	Soybean	plastid	22.11	21.14
KRH69945	Soybean	plastid	21.31	20.46
KRH08304	Soybean	plastid	21.12	19.63
KRG88927	Soybean	cytosol	22.91	15.44
KRH75351	Soybean	cytosol	22.71	15.32
KRH65380	Soybean	cytosol	21.12	14.48
KRH76167	Soybean	cytosol	21.12	14.38

Protein Annotations

EntrezGene:100787926	MapMan:15.5.12	MapMan:26.9.1.6.2	EMBL:ACUP02002772	EnsemblPlantsGene:GLYMA_04G251900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1JZ90	InterPro:IPR005202
EnsemblPlants:KRH64716	ProteinID:KRH64716	ProteinID:KRH64716.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF25	InterPro:SCL26/NSP2	InterPro:TF_GRAS	UniParc:UPI000233A663	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:51872455..51874523

Molecular Weight (calculated)

55186.7 Da

IEP (calculated)

6.156

GRAVY (calculated)

-0.310

Length

502 amino acids

Sequence
(BLAST)

001: MEIDMDMDFS GYSTITNTIP SSDDDYGCNW NHWSPVVNWD AFTGAHDDFH HLIDSIMCDS AAAEEDNLSP DDHAASNSPS ASVTEEEDDD ADEETGPVDD
101: SKGLRVVHLL MAAAEALTGA PKSRDLARVI LVRLKELVSH AAPPHGSNME RLAAYFTDAL QGLLEGASGG AHNNKRHHHY NIITSSCGPH HRDDHHNHQS
201: NTLAAFQLLQ DMSPYVKFGH FTANQAILES VAHERRVHIV DYDIMEGVQW ASLMQALASN KTGPPGPHLR ITALSRTGSG RRSIATVQET GRRLTAFAAS
301: LGQPFSFHHC RLDPDETFKP SSLKLVRGEA LVFNCMLNLP HLSYRAPDSV ASFLSGAKAL KPRLVTLVEE EVGSSAGGFV GRFMESLHHY SAVFDSLEAG
401: FPMQGRARAL VERVFFGPRI VGSLGRLYRT GEEERGSWGE WLGAAGFRGV PMSFANHCQA KLLIGLFNDG YRVEELGTNK LVLDWKSRRL LSASLWTQIN
501: SF

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.