Factsheet for PGSC0003DMT400031475

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013150.1.1	Tomato	cytosol	92.74	94.46
VIT_18s0001g03310.t01	Wine grape	cytosol	71.37	72.24
KRH53205	Soybean	cytosol	64.72	64.85
KRH64716	Soybean	cytosol	65.52	64.74
KRH18776	Soybean	cytosol	56.45	59.32
AT4G08250.1	Thale cress	cytosol	50.2	51.55
Bra002894.1-P	Field mustard	cytosol	49.19	50.94
CDY45672	Canola	cytosol	49.4	50.1
GSMUA_Achr1P26740_001	Banana	cytosol	52.82	49.53
CDY17336	Canola	cytosol	49.6	49.3
TraesCS4B01G215700.1	Wheat	cytosol	54.23	47.95
TraesCS4A01G088500.1	Wheat	cytosol	54.23	47.95
TraesCS4D01G216200.1	Wheat	cytosol	54.03	47.77
Os03t0263300-01	Rice	cytosol	54.64	47.13
Zm00001d028526_P001	Maize	cytosol	51.21	45.04
OQU92876	Sorghum	cytosol	50.4	44.96
HORVU4Hr1G061310.1	Barley	cytosol, mitochondrion, plastid	54.03	44.22
PGSC0003DMT400010158	Potato	cytosol	31.85	31.98
PGSC0003DMT400033037	Potato	plastid	21.17	19.27
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	24.4	15.76
PGSC0003DMT400012104	Potato	plastid	21.98	15.57

Protein Annotations

EntrezGene:102585836	MapMan:15.5.12	MapMan:26.9.1.6.2	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	UniProt:M1AVQ8
PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400012071	PGSC:PGSC0003DMG400012071	EnsemblPlants:PGSC0003DMT400031475	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF25	InterPro:SCL26/NSP2	InterPro:TF_GRAS	UniParc:UPI000295B07E	RefSeq:XP_006351875.1	SEG:seg

Description

Nodulation signaling pathway 2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012071]

Coordinates

chr11:-:10423320..10424991

Molecular Weight (calculated)

55169.9 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.269

Length

496 amino acids

Sequence
(BLAST)

001: MAMMVDETIS DFDCYGSLST PTTTITTTTT SSSSEDDHGC TWNDWSPVFD WDAFSGGDNF QDLIESMIQG SGNCFHNSEE DSAEIMEEEE EEESGDSNNN
101: QSEDINGLKL VHLLMAAAEA LTGVNKSREL ARVILVRLKE LASPNGATNM ERLAAHFTDA LQALLDGAAS GTLHAKLMFS PNYKDEHHQG DVLAAFQLLQ
201: DMSPFVKFGH FTANQAIFES VTHDRRVHIV DYDIMEGIQW ASLMQALVSR KDGPPTPHLR ITALSRSGSG RRSFGTVQET GRRLTAFATS IGQPFSFHHC
301: RLDSDEIFKP TNLKLVRGEA LIINCMLHLP HFSYRASDSV ASFLSGSKTL NPRLVTLVEE ELRPIGDEEG FMGRFMDTLH HYSALYDSLE AGFPLQSRAR
401: ALVERVFLGP RITGSLARIY RARGEEERCS WGEWLSGVGF CESNISFANH CQAKLLLGLF NDGYRVEEIG TNKLVLGWKS RRLLSASIWT TMDIDL

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.