Factsheet for PGSC0003DMT400033037

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085600.1.1	Tomato	plastid	94.13	95.71
VIT_04s0023g01380.t01	Wine grape	plastid	52.11	52.79
CDY13032	Canola	cytosol	45.14	49.9
CDY43895	Canola	cytosol	44.77	49.69
KRH28630	Soybean	plastid	46.97	49.61
KRH76844	Soybean	plastid	47.71	49.52
KRH69945	Soybean	plastid	47.52	49.52
Bra028100.1-P	Field mustard	cytosol	44.59	49.49
CDX75590	Canola	cytosol	44.22	49.49
CDX72597	Canola	cytosol	41.65	49.24
CDX69238	Canola	cytosol	44.04	49.08
KRH08304	Soybean	plastid	48.62	49.07
AT4G36710.1	Thale cress	cytosol	43.49	48.77
Bra011700.1-P	Field mustard	cytosol	44.04	34.68
GSMUA_Achr3P29970_001	Banana	cytosol	31.74	32.58
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	30.46	31.09
GSMUA_Achr4P07190_001	Banana	plastid	28.99	30.27
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	31.56	22.4
PGSC0003DMT400012104	Potato	plastid	27.89	21.71
PGSC0003DMT400031475	Potato	cytosol	19.27	21.17
PGSC0003DMT400010158	Potato	cytosol	18.9	20.85

Protein Annotations

EntrezGene:102584482	MapMan:15.5.12	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0048831
InterPro:IPR005202	UniProt:M1AYI2	PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400012683	PGSC:PGSC0003DMG400012683	EnsemblPlants:PGSC0003DMT400033037
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	InterPro:TF_GRAS	UniParc:UPI00029510E1	RefSeq:XP_006363143.1
SEG:seg	:	:	:	:	:

Description

GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400012683]

Coordinates

chr2:+:40828075..40830310

Molecular Weight (calculated)

60231.7 Da

IEP (calculated)

5.669

GRAVY (calculated)

-0.091

Length

545 amino acids

Sequence
(BLAST)

001: MKVPFSTNDN VSSKPLISSN NNNLRNNVTF PAATNGSNLC YEPKSVLELR RSPSPIVDKQ IITTNPDLSA LCGGGEDPLQ LGDHVLTNFE DWDSLMRELG
101: LHDDSASLSK TNPPLSLTQS ESLTQFHNLS EFSADSTQFA NPDFSFSEST FPQQFPAVNQ GSFINALDLS GDIHQNWNVG FDYVDELIRF AECFETNAFQ
201: LAHVILARLN QRLRSAAGKP LQRAAFYFKE ALQAQLAGSA RQTRPSSSSD VIQTIKSYKI FSNISPIPMF SSFTANQAVL EAVDGSMLVH VIDFDIGLGG
301: HWASFMKELA DKAECRKANA PVLRITALVP EEYAVESRLI RENLTQFARE LNIGFEIDFV LIRTFELLSF KAIKFMEGEK TAVLLSPAIF RRVGSGFVND
401: LRRISPNVVV HVDSEGLMGY GAMSFRQTVI DGLEFYSTLL ESLEAANIGG GNCGDWMRKI ENFVLFPKIV DMIGAVGRRG GGGSWKDAMM GAGFRPVGLS
501: QFADFQADCL LGRVQVRGFH VAKRQAEMLL CWHDRALVAT SAWRC

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.