Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75590 | Canola | cytosol | 88.89 | 88.71 |
| CDX69238 | Canola | cytosol | 88.68 | 88.14 |
| CDX72597 | Canola | cytosol | 82.51 | 86.98 |
| Bra011700.1-P | Field mustard | cytosol | 88.68 | 62.28 |
| KRH28630 | Soybean | plastid | 53.91 | 50.78 |
| KRH76844 | Soybean | plastid | 54.32 | 50.29 |
| KRH08304 | Soybean | plastid | 55.56 | 50.0 |
| KRH69945 | Soybean | plastid | 53.7 | 49.9 |
| VIT_04s0023g01380.t01 | Wine grape | plastid | 51.85 | 46.84 |
| Solyc02g085600.1.1 | Tomato | plastid | 48.77 | 44.22 |
| PGSC0003DMT400033037 | Potato | plastid | 48.77 | 43.49 |
| GSMUA_Achr3P29970_001 | Banana | cytosol | 33.54 | 30.7 |
| GSMUA_Achr4P07190_001 | Banana | plastid | 30.86 | 28.74 |
| GSMUA_Achr4P03460_001 | Banana | cytosol, plastid | 30.25 | 27.53 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 28.19 | 24.55 |
| AT3G60630.1 | Thale cress | cytosol | 27.78 | 21.67 |
| AT2G45160.1 | Thale cress | cytosol | 28.4 | 21.56 |
| AT4G08250.1 | Thale cress | cytosol | 19.34 | 19.46 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:829824 | UniProt:A0A178UVI6 | ProteinID:AEE86692.1 | EMBL:AK118497 | ArrayExpress:AT4G36710 |
| EnsemblPlantsGene:AT4G36710 | RefSeq:AT4G36710 | TAIR:AT4G36710 | RefSeq:AT4G36710-TAIR-G | EnsemblPlants:AT4G36710.1 | TAIR:AT4G36710.1 |
| Unigene:At.31304 | ProteinID:CAB16826.1 | ProteinID:CAB80337.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0048831 |
| InterPro:IPR005202 | RefSeq:NP_195389.4 | UniProt:O23210 | ProteinID:OAO97858.1 | PFAM:PF03514 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF53 | InterPro:TF_GRAS | UniParc:UPI00000ADF47 | SEG:seg | : | : |
Description
SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
Coordinates
chr4:+:17305758..17307648
Molecular Weight (calculated)
54151.2 Da
IEP (calculated)
4.970
GRAVY (calculated)
-0.134
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.