CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08304	Soybean	plastid	91.97	89.07
KRH28630	Soybean	plastid	66.35	67.25
KRH76844	Soybean	plastid	67.3	67.05
AT4G36710.1	Thale cress	cytosol	49.9	53.7
CDX75590	Canola	cytosol	49.9	53.59
CDX69238	Canola	cytosol	49.9	53.37
CDX72597	Canola	cytosol	46.65	52.93
Bra028100.1-P	Field mustard	cytosol	49.33	52.55
CDY43895	Canola	cytosol	49.14	52.34
CDY13032	Canola	cytosol	49.14	52.13
VIT_04s0023g01380.t01	Wine grape	plastid	53.35	51.86
PGSC0003DMT400033037	Potato	plastid	49.52	47.52
Solyc02g085600.1.1	Tomato	plastid	48.57	47.39
Bra011700.1-P	Field mustard	cytosol	49.71	37.57
GSMUA_Achr3P29970_001	Banana	cytosol	33.65	33.15
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	32.5	31.84
GSMUA_Achr4P07190_001	Banana	plastid	30.98	31.03
KRH18776	Soybean	cytosol	21.8	24.15
KRH64716	Soybean	cytosol	20.46	21.31
KRH53205	Soybean	cytosol	20.08	21.21
KRH75351	Soybean	cytosol	29.25	20.56
KRH76167	Soybean	cytosol	28.87	20.49
KRH65380	Soybean	cytosol	28.49	20.36
KRG88927	Soybean	cytosol	28.49	20.0
KRH43393	Soybean	cytosol	17.02	18.28

Protein Annotations

EntrezGene:100802883	MapMan:15.5.12	EMBL:ACUP02000739	EnsemblPlantsGene:GLYMA_02G058700	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048831
UniProt:I1JCS2	InterPro:IPR005202	EnsemblPlants:KRH69945	ProteinID:KRH69945	ProteinID:KRH69945.1	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	InterPro:TF_GRAS	UniParc:UPI0002337163	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:5266675..5268783

Molecular Weight (calculated)

58200.1 Da

IEP (calculated)

6.306

GRAVY (calculated)

-0.227

Length

523 amino acids

Sequence
(BLAST)

001: MRVPSSPQAS NNHVLHTNNN PNTFTYEPTS VLDLCRSPSP EKKLTVPKPE PQHNNQLDLD DHVLPNSDWW ESIMKDLTLP EDSPTPLLKT NPSCIPDFPP
101: SSQDPSFDHP TPDFTSLSEI YNQNIPFNYP SNTLEPSFHD LNHSLHPHNN NWDFIEEFIR AADCYDSSHF QLAQAILERL NNRLLRSPMG KPLHRAAFHF
201: KDALQSILSG SNRNGNGSNL LSSMAEIVQT IKTYKAFSGI SPIPMFSIFT TNQALLETLN GSSFVHVIDF EIGLGIQYAS LMKEIAEKAG PGTAPLLRIT
301: AVVPEEYAVE SRLVRQNLNQ FAQDLGISAQ VDFVPLRTFE TVSFKAVRFI DGEKIAVLLS PTIFSRLGGN GGSVGAFLAD VRRMAPGVVV FVDGEGWTEA
401: AAAASFRRGV VSSLEFYSMM LESLDASVAS GGGGEWVRRI EMLLLRPKIF AAVEGARRRT PPWREAFYGA GMRPVQLSQF ADYQAECLLA KVQIRGFHVD
501: KRHAELVLCW HERAMVSTSA WRC

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.