Factsheet for VIT_04s0023g01380.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76844	Soybean	plastid	53.9	55.24
KRH28630	Soybean	plastid	52.79	55.04
CDX75590	Canola	cytosol	48.51	53.59
CDX69238	Canola	cytosol	48.51	53.37
KRH69945	Soybean	plastid	51.86	53.35
Bra028100.1-P	Field mustard	cytosol	48.33	52.95
CDY13032	Canola	cytosol	48.51	52.94
KRH08304	Soybean	plastid	52.97	52.78
CDY43895	Canola	cytosol	48.14	52.75
CDX72597	Canola	cytosol	45.17	52.71
PGSC0003DMT400033037	Potato	plastid	52.79	52.11
Solyc02g085600.1.1	Tomato	plastid	51.67	51.87
AT4G36710.1	Thale cress	cytosol	46.84	51.85
Bra011700.1-P	Field mustard	cytosol	48.7	37.86
GSMUA_Achr3P29970_001	Banana	cytosol	34.57	35.03
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	33.27	33.52
GSMUA_Achr4P07190_001	Banana	plastid	32.16	33.14
VIT_02s0154g00400.t01	Wine grape	cytosol	28.81	30.27
VIT_18s0001g03310.t01	Wine grape	cytosol	21.75	23.88
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	34.2	23.74
VIT_04s0044g00620.t01	Wine grape	cytosol	14.31	19.3

Protein Annotations

EntrezGene:100251313	wikigene:100251313	MapMan:15.5.12	ProteinID:CCB44472	ProteinID:CCB44472.1	UniProt:F6GWY6
EMBL:FN594959	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0048831	InterPro:IPR005202	EntrezGene:LOC100251313	wikigene:LOC100251313
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	TIGR:TC55965	TIGR:TC69182
InterPro:TF_GRAS	UniParc:UPI00015CB0B3	ArrayExpress:VIT_04s0023g01380	EnsemblPlantsGene:VIT_04s0023g01380	EnsemblPlants:VIT_04s0023g01380.t01	unigene:Vvi.647
RefSeq:XP_002268445	RefSeq:XP_002268445.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:17877548..17879580

Molecular Weight (calculated)

59631.9 Da

IEP (calculated)

6.102

GRAVY (calculated)

-0.103

Length

538 amino acids

Sequence
(BLAST)

001: MKVPVPAQNN HSPNPKPLSC NNTTRNTAFR SPATDTINVC YEPTSVLDLR RSPSPVADKA ATFPGITAVS DVSLPLSEEP GFQWEDHGMH NLDDWDPTVW
101: DFVLRDDSAP VFGSVPQLGP CDPQFPHLPL PDLPPSQPIY HTQLLPFDFT LSEISSNQNH NFNLNSFHWN VGSEFVEELI RAAECFGSNN SQLAQAILAR
201: LNQRLRAPVG KPLQRAAFYF KEALHSLLTG SNRKSHSSAS EIVQTIKAYK AFSMISPIAM FSNFTASQAL LEAVDGSLFI HIIDFDIGLG GQYASFMKEI
301: ADRSEACKVN PPVLRITAVV PEEYAVESRL IKENLFQFAQ ELKIEFRIEF VLIPTFEVLS FKAVKFIDGE KTAVNISPAI FRRLGTTNNI AGFFCDLRRI
401: SPQVVVFVDG EGWTDSGATS FNRNFINGLE FYTAMLESLD AGGAGAGGDW VRKIEMSLIQ PKIFAAVGDV GRRVTAWREL FSGAGLGQVQ WSQFAESQAE
501: CLLGKSQVRG FHVAKRQAEM LLCWHGKPLV ATSAWRWL

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.