Factsheet for VIT_04s0044g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43393	Soybean	cytosol	56.64	46.41
Solyc11g005610.1.1	Tomato	cytosol	49.12	39.84
PGSC0003DMT400010158	Potato	cytosol	48.87	39.47
Os11t0160550-00	Rice	cytosol	36.59	31.67
TraesCS4A01G209800.1	Wheat	cytosol	36.34	30.59
TraesCS4B01G113300.1	Wheat	cytosol	35.84	30.17
Zm00001d053163_P001	Maize	cytosol	35.59	30.02
HORVU4Hr1G020490.26	Barley	cytosol	35.59	29.96
TraesCS4D01G110800.1	Wheat	cytosol	35.59	29.96
KXG23028	Sorghum	cytosol	33.33	26.76
Zm00001d041919_P001	Maize	cytosol, peroxisome, plastid	31.83	25.81
VIT_18s0001g03310.t01	Wine grape	cytosol	29.82	24.29
Os12t0162700-00	Rice	nucleus	16.79	18.16
VIT_04s0023g01380.t01	Wine grape	plastid	19.3	14.31
VIT_02s0154g00400.t01	Wine grape	cytosol	18.3	14.26
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	23.31	12.0
Os11t0160600-01	Rice	cytosol	0.5	4.0

Protein Annotations

MapMan:15.5.12	ProteinID:CBI37595	ProteinID:CBI37595.3	UniProt:D7U419	EMBL:FN596506	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF55	InterPro:TF_GRAS	UniParc:UPI00015CBFEC	ArrayExpress:VIT_04s0044g00620
EnsemblPlantsGene:VIT_04s0044g00620	EnsemblPlants:VIT_04s0044g00620.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:21549233..21550687

Molecular Weight (calculated)

45426.3 Da

IEP (calculated)

4.692

GRAVY (calculated)

-0.151

Length

399 amino acids

Sequence
(BLAST)

001: MAYEQIPYPL EPSYNEKPLD CSLETVFSFQ TEDPICPKTI QDGIFHDQDM ERLFQVEDGL LDFNSIHGDH IMGLERAEET KMGYDASQEA PEQVDFLADE
101: SSHLNGIQEE LMEDCGLADL LLAGAEAVEA QNWPLASSII LKLNDLLLHQ AKGDNQFNRL ALFFTQGLYY RSISAPEMPL QKPVSRQPNT MSAFQMLQEL
201: SPYVKFAHFT ANQAILEAAE GGQEVHVIDF DIMEGIQSLS FIKTFLGGVS KLSPKIVVLV EEDLFNFCKI PTMSFVEFFC EALHHYAAFS DSLMSSFSGI
301: YKVGLRLIEE EFLRNRIWNS LRQFPCEKKE KSLWEDGFAS LKRFKPIPLS SCNVAQAKFL VGLFSGEYWV KHENCRLALC WKSRPLTTAS IWIHAHFKK

Best Arabidopsis Sequence Match ( AT4G08250.1 )
(BLAST)

001: MNYPYEDFLD LFFSTHTDPL ATAASTSSNG YSLNDLDIDW DCDFRDVIES IMGDEGAMME PESEAVPMLH DQEGLCNSAS TGLSVADGVS FGEPKTDESK
101: GLRLVHLLVA AADASTGANK SRELTRVILA RLKDLVSPGD RTNMERLAAH FTNGLSKLLE RDSVLCPQQH RDDVYDQADV ISAFELLQNM SPYVNFGYLT
201: ATQAILEAVK YERRIHIVDY DINEGVQWAS LMQALVSRNT GPSAQHLRIT ALSRATNGKK SVAAVQETGR RLTAFADSIG QPFSYQHCKL DTNAFSTSSL
301: KLVRGEAVVI NCMLHLPRFS HQTPSSVISF LSEAKTLNPK LVTLVHEEVG LMGNQGFLYR FMDLLHQFSA IFDSLEAGLS IANPARGFVE RVFIGPWVAN
401: WLTRITANDA EVESFASWPQ WLETNGFKPL EVSFTNRCQA KLLLSLFNDG FRVEELGQNG LVLGWKSRRL VSASFWASCQ TNQ

Arabidopsis Description

SCL26Scarecrow-like protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.