Factsheet for Os12t0162700-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23028	Sorghum	cytosol	40.92	30.38
Zm00001d041919_P001	Maize	cytosol, peroxisome, plastid	39.02	29.27
Os11t0160550-00	Rice	cytosol	31.98	25.6
VIT_04s0044g00620.t01	Wine grape	cytosol	18.16	16.79
Solyc11g005610.1.1	Tomato	cytosol	20.05	15.04
PGSC0003DMT400010158	Potato	cytosol	19.78	14.78
KRH43393	Soybean	cytosol	18.43	13.96
Os10t0551200-01	Rice	cytosol	12.74	11.81
Os03t0263300-01	Rice	cytosol	18.16	11.65
Os06t0105350-00	Rice	plastid	14.91	11.25
Os03t0103400-01	Rice	cytosol	14.36	11.18
Os02t0663100-01	Rice	cytosol	15.99	8.25
Os02t0662700-01	Rice	cytosol	15.45	8.04
Os04t0555000-01	Rice	cytosol	15.18	7.88
Os11t0160600-01	Rice	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Os12t0162700-00	EnsemblPlantsGene:Os12g0162700	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF61	PFAM:PF03514	PFscan:PS50985	ProteinID:BAT16001.1	SEG:seg	UniParc:UPI000393B7AE
UniProt:A0A0P0Y795	MapMan:15.5.12	:	:	:	:

Description

Similar to GRAS family transcription factor containing protein. (Os12t0162700-00)

Coordinates

chr12:+:3170547..3172120

Molecular Weight (calculated)

40111.1 Da

IEP (calculated)

4.299

GRAVY (calculated)

-0.398

Length

369 amino acids

Sequence
(BLAST)

001: METMSYPCSL LIPFSTQFEE ISSSSLLLWS PQAEENPHEN ANMYEFDADH SHDQIHQDHQ FLDMMVIQES ANEFDGNHSH DQIHQDHEFL ETMVIQESAN
101: EFDGDHSHDQ IHQDHEFLEM MAIQESANDL LQLQDDFSVP NADPLAASFE FDERLAVAGH ENGNVVATQE ESAGDLLLAG AMAVDAGDAV HASAIMSRLD
201: DLLADIAGRR SCEATSPVDH LAYYFARGLK LRISGAATPA SSPPPPAANW SSPAYRMLQE LTPFVKFAHF TANQAILEAT ADDLDVHVVD FNVGEGVQWS
301: SLMSDLAAAG RHRCSTSRTS SPPAPARPAR PMRGGGCRSS PSRCTSPSAT PPSTSTTATM TTNSITSSP

Best Arabidopsis Sequence Match ( AT3G50650.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQLIK QKQQQQSQHQ QQEEQEQEPN PWPNPSFGFT LPGSGFSDPF QVTNDPGFHF PHLEHHQNAA VASEEFDSDE WMESLINGGD
101: ASQTNPDFPI YGHDPFVSFP SRLSAPSYLN RVNKDDSASQ QLPPPPASTA IWSPSPPSPQ HPPPPPPQPD FDLNQPIFKA IHDYARKPET KPDTLIRIKE
201: SVSESGDPIQ RVGYYFAEAL SHKETESPSS SSSSSLEDFI LSYKTLNDAC PYSKFAHLTA NQAILEATNQ SNNIHIVDFG IFQGIQWSAL LQALATRSSG
301: KPTRIRISGI PAPSLGDSPG PSLIATGNRL RDFAAILDLN FEFYPVLTPI QLLNGSSFRV DPDEVLVVNF MLELYKLLDE TATTVGTALR LARSLNPRIV
401: TLGEYEVSLN RVEFANRVKN SLRFYSAVFE SLEPNLDRDS KERLRVERVL FGRRIMDLVR SDDDNNKPGT RFGLMEEKEQ WRVLMEKAGF EPVKPSNYAV
501: SQAKLLLWNY NYSTLYSLVE SEPGFISLAW NNVPLLTVSS WR

Arabidopsis Description

SCL7Uncharacterized protein At3g50650 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.