Factsheet for Os10t0551200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0809300-01
Os05t0180600-02
Os07t0264800-01
Os08t0307400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Os07t0264800-01	AT1G72030.1	21798944
AT4G00150.1	Os05t0180600-02	AT1G60490.1	21798944
AT4G00150.1	Os08t0307400-02	AT1G60490.1	21798944
AT4G00150.1	Os03t0809300-01	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035873_P001	Maize	cytosol, plastid	48.49	67.48
Zm00001d047957_P001	Maize	cytosol	21.61	66.67
Zm00001d018956_P001	Maize	plastid	20.1	55.94
Zm00001d027569_P001	Maize	plastid	43.97	55.91
HORVU1Hr1G053510.1	Barley	plastid	85.68	55.0
TraesCS1D01G212800.1	Wheat	cytosol	85.18	54.59
TraesCS1B01G223400.1	Wheat	cytosol, plastid	85.18	54.33
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	85.18	54.24
Zm00001d022162_P001	Maize	cytosol	20.35	49.09
EER91968	Sorghum	cytosol, mitochondrion	78.64	48.91
Os03t0103400-01	Rice	cytosol	58.04	48.73
Zm00001d029855_P001	Maize	mitochondrion	78.14	48.22
Zm00001d042852_P001	Maize	cytosol	26.13	42.28
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	31.66	35.59
Os06t0105350-00	Rice	plastid	43.47	35.38
Zm00001d031615_P001	Maize	cytosol	24.12	35.29
VIT_02s0154g00400.t01	Wine grape	cytosol	44.97	34.96
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	15.33	33.52
Solyc08g078800.1.1	Tomato	plastid	39.45	33.12
GSMUA_Achr11P...	Banana	cytosol	49.5	33.11
GSMUA_Achr5P20860_001	Banana	cytosol	44.22	31.77
GSMUA_Achr8P11160_001	Banana	cytosol	51.76	30.88
AT4G00150.1	Thale cress	cytosol, plastid	41.96	29.93
Os02t0662700-01	Rice	cytosol	52.01	29.2
Os04t0555000-01	Rice	cytosol	51.76	28.97
Os02t0663100-01	Rice	cytosol	51.26	28.53
Bra003311.1-P	Field mustard	nucleus	36.18	28.46
Bra037319.1-P	Field mustard	cytosol, plastid	39.45	27.94
CDY63062	Canola	cytosol, plastid	39.45	27.94
CDY63061	Canola	cytosol, plastid	39.45	27.94
GSMUA_Achr11P...	Banana	cytosol	48.49	27.89
CDX95633	Canola	cytosol	35.93	25.81
CDX83398	Canola	cytosol	36.93	24.92
CDY67934	Canola	cytosol	36.18	24.08
CDX89065	Canola	nucleus	33.17	24.0
Bra000375.1-P	Field mustard	cytosol	36.43	23.89
CDY48367	Canola	cytosol	33.67	23.76
Solyc01g090950.2.1	Tomato	cytosol	45.48	23.54
CDY56248	Canola	cytosol	35.43	23.46
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	45.48	23.35
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	44.97	23.31
AT3G60630.1	Thale cress	cytosol	35.93	22.95
KRH76167	Soybean	cytosol	41.96	22.66
AT2G45160.1	Thale cress	cytosol	36.43	22.66
KRH75351	Soybean	cytosol	41.96	22.45
PGSC0003DMT400012104	Potato	plastid	39.2	22.29
KRG88927	Soybean	cytosol	41.71	22.28
KRH65380	Soybean	cytosol	40.45	21.99
Os11t0160550-00	Rice	cytosol	23.62	20.39
Os03t0263300-01	Rice	cytosol	24.37	16.87
Os12t0162700-00	Rice	nucleus	11.81	12.74
Os11t0160600-01	Rice	cytosol	0.5	4.0

Protein Annotations

MapMan:15.5.12	ProteinID:BAF27160.2	ProteinID:BAT11961.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	InterPro:IPR005202	EnsemblPlantsGene:Os10g0551200
EnsemblPlants:Os10t0551200-01	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF125	UniProt:Q0IVV5
InterPro:TF_GRAS	UniParc:UPI0001B663C0	SEG:seg	:	:	:

Description

Similar to Scl1 protein (Fragment). (Os10t0551200-01)

Coordinates

chr10:-:21635191..21637744

Molecular Weight (calculated)

41984.4 Da

IEP (calculated)

6.507

GRAVY (calculated)

0.238

Length

398 amino acids

Sequence
(BLAST)

001: MAAAPAPKLP PFPAGGFVPA LKPKAEAAND EAAAAVEQLA EAAKLAEAGD AFGAREILAR LNYRLPAAPT AGTPLLRSAF YFKEALRLTL SPTGDAPAPS
101: ASTPYDVVVK LGAYKAFSEV SPVLQFAHLT CVQAVLDELG GAGCIHVLDF DIGMGEQWAS LMQELAQLRP AAALKVTALV SPASHHPLEL QLIHENLSGF
201: AAELGVFFHF TVFNIDTLDP AELLANATAG DAVAVHLPVG PAHAAATPAV LRLVKRLGAK VVVSVDRGCD RSDLPFAAHL FHSFHSAVYL LESIDAVGTD
301: PDTASKIERY LIHPAIEQCV VASHRAASAM DKAPPPPWRA AFAAAGFAPV QATTFAESQA ESLLSKVHVR GFRVEKRAGS LCLYWQRGEL VSVSAWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.