Factsheet for Os02t0662700-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0809300-01
Os05t0180600-02
Os07t0264800-01
Os08t0307400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Os07t0264800-01	AT1G72030.1	21798944
AT4G00150.1	Os05t0180600-02	AT1G60490.1	21798944
AT4G00150.1	Os08t0307400-02	AT1G60490.1	21798944
AT4G00150.1	Os03t0809300-01	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0663100-01	Rice	cytosol	87.73	86.99
TraesCS6B01G277400.1	Wheat	mitochondrion	77.43	78.43
TraesCS6A01G247200.1	Wheat	mitochondrion	77.57	78.12
TraesCS6D01G229400.1	Wheat	mitochondrion	77.29	77.51
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	76.16	76.81
EES05768	Sorghum	cytosol	75.74	75.0
Zm00001d051387_P001	Maize	cytosol	74.61	74.72
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	70.94	71.25
Os04t0555000-01	Rice	cytosol	68.69	68.5
OQU85680	Sorghum	mitochondrion	60.79	66.62
Os10t0551200-01	Rice	cytosol	29.2	52.01
GSMUA_Achr11P...	Banana	cytosol	40.9	48.74
GSMUA_Achr5P20860_001	Banana	cytosol	35.54	45.49
Os03t0103400-01	Rice	cytosol	29.62	44.3
Os06t0105350-00	Rice	plastid	30.18	43.76
GSMUA_Achr8P11160_001	Banana	cytosol	39.92	42.43
GSMUA_Achr11P...	Banana	cytosol	39.63	40.61
VIT_02s0154g00400.t01	Wine grape	cytosol	29.2	40.43
AT4G00150.1	Thale cress	cytosol, plastid	30.75	39.07
CDY63061	Canola	cytosol, plastid	29.48	37.19
Bra037319.1-P	Field mustard	cytosol, plastid	29.48	37.19
CDY63062	Canola	cytosol, plastid	29.48	37.19
Solyc08g078800.1.1	Tomato	plastid	24.68	36.92
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.35	36.0
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	9.17	35.71
Bra003311.1-P	Field mustard	nucleus	25.25	35.38
CDX95633	Canola	cytosol	27.5	35.2
CDY67934	Canola	cytosol	29.2	34.62
CDY56248	Canola	cytosol	29.34	34.61
KRG88927	Soybean	cytosol	35.68	33.96
CDX83398	Canola	cytosol	27.93	33.56
KRH75351	Soybean	cytosol	35.12	33.47
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	36.25	33.46
Solyc01g090950.2.1	Tomato	cytosol	36.25	33.42
Bra000375.1-P	Field mustard	cytosol	28.21	32.95
KRH76167	Soybean	cytosol	33.85	32.56
AT2G45160.1	Thale cress	cytosol	29.2	32.34
CDX89065	Canola	nucleus	24.82	32.0
KRH65380	Soybean	cytosol	32.58	31.56
AT3G60630.1	Thale cress	cytosol	27.64	31.46
PGSC0003DMT400012104	Potato	plastid	31.03	31.43
CDY48367	Canola	cytosol	24.82	31.21
Os11t0160550-00	Rice	cytosol	15.37	23.64
Os03t0263300-01	Rice	cytosol	15.66	19.3
Os12t0162700-00	Rice	nucleus	8.04	15.45
Os11t0160600-01	Rice	cytosol	0.28	4.0

Protein Annotations

MapMan:15.5.12	EntrezGene:4330230	ProteinID:BAD25636.1	ProteinID:BAD27679.1	ProteinID:BAS80153.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	InterPro:IPR005202
EnsemblPlantsGene:Os02g0662700	EnsemblPlants:Os02t0662700-01	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF64
UniProt:Q6H6L3	InterPro:TF_GRAS	UniParc:UPI00003B44F8	RefSeq:XP_015627415.1	SEG:seg	:

Description

SCARECROW-LIKE 1, hairy meristem 1Similar to Scl1 protein (Fragment). (Os02t0662700-01);Similar to Scl1 protein (Fragment). (Os02t0662700-02)

Coordinates

chr2:+:26841588..26844306

Molecular Weight (calculated)

74252.3 Da

IEP (calculated)

5.989

GRAVY (calculated)

-0.020

Length

709 amino acids

Sequence
(BLAST)

001: MRAALFGAER SGVVDHGGGD KEELFWPAGK GGLVVVEPRS VLDCTRSPSP PYSTSTLSSS LGGGSADSTG VAAVSESSTA AAGATKWGAP GEHGGGGKEE
101: WGGGCELPPI PGALDVGLVG GEGWDATATL GNAAGPDQSF LNWIIGAAGD LEQPGPPLPV LQQPLIDNAG FGIPAVDTMG FSLDHPLSGV ASDLSSSGAH
201: TATGGGGKAS LGFGLFSPEA TSLEQPPPSM LFHEGIDTKP PLLGAQPQFL LNHYQPQPPN PAAALFMPLP PFPEHNHQSP HLQPPLKRHH AIPDDLYLAR
301: NQQQSSAVAP GLAYSPPLHG PAPFQLHPSP PPIRGAMKST AAEAAQQQLL DELAAAAKAT EAGNSVGARE ILARLNQQLP QLGKPFLRSA SYLKEALLLA
401: LADSHHGSSG VTSPLDVALK LAAYKSFSDL SPVLQFTNFT ATQALLDEIG GMATSCIHVI DFDLGVGGQW ASFLQELAHR RGAGGMALPL LKLTAFMSTA
501: SHHPLELHLT QDNLSQFAAE LRIPFEFNAV SLDAFNPAEL ISSSGDEVVA VSLPVGCSAR APPLPAILRL VKQLCPKVVV AIDHGGDRAD LPFSQHFLNC
601: FQSCVFLLDS LDAAGIDADS ACKIERFLIQ PRVEDAVIGR HKAQKAIAWR SVFAATGFKP VQLSNLAEAQ ADCLLKRVQV RGFHVEKRGA ALTLYWQRGE
701: LVSISSWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.