Factsheet for TraesCS6D01G229400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G054400.1
TraesCS5A01G124000.1
TraesCS5B01G062000.3
TraesCS5B01G123600.1
TraesCS5D01G065700.1
TraesCS5D01G131900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	TraesCS5A01G124000.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5B01G123600.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5D01G131900.1	AT1G72030.1	21798944
AT4G00150.1	TraesCS5A01G054400.1	AT1G60490.1	21798944
AT4G00150.1	TraesCS5B01G062000.3	AT1G60490.1	21798944
AT4G00150.1	TraesCS5D01G065700.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G277400.1	Wheat	mitochondrion	97.6	98.57
TraesCS6A01G247200.1	Wheat	mitochondrion	98.02	98.44
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	95.62	96.16
Os02t0663100-01	Rice	cytosol	79.63	78.74
Os02t0662700-01	Rice	cytosol	77.51	77.29
Zm00001d051387_P001	Maize	cytosol	75.81	75.71
EES05768	Sorghum	cytosol	76.24	75.28
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	71.43	71.53
OQU85680	Sorghum	mitochondrion	60.82	66.46
GSMUA_Achr11P...	Banana	cytosol	40.74	48.4
TraesCS1D01G212800.1	Wheat	cytosol	40.31	45.89
TraesCS7D01G011400.1	Wheat	plastid	34.23	45.49
GSMUA_Achr5P20860_001	Banana	cytosol	35.64	45.49
GSMUA_Achr8P11160_001	Banana	cytosol	40.03	42.43
VIT_02s0154g00400.t01	Wine grape	cytosol	30.13	41.6
TraesCS4D01G360200.1	Wheat	cytosol	37.48	41.28
GSMUA_Achr11P...	Banana	cytosol	39.89	40.75
AT4G00150.1	Thale cress	cytosol, plastid	31.26	39.61
Solyc08g078800.1.1	Tomato	plastid	25.6	38.19
CDY63062	Canola	cytosol, plastid	29.99	37.72
CDY63061	Canola	cytosol, plastid	29.99	37.72
Bra037319.1-P	Field mustard	cytosol, plastid	29.99	37.72
Bra003311.1-P	Field mustard	nucleus	25.74	35.97
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.18	35.74
CDX95633	Canola	cytosol	27.44	35.02
CDY67934	Canola	cytosol	29.28	34.62
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	8.91	34.62
CDY56248	Canola	cytosol	29.28	34.44
KRG88927	Soybean	cytosol	35.93	34.09
KRH75351	Soybean	cytosol	35.78	34.01
CDX83398	Canola	cytosol	27.86	33.39
Solyc01g090950.2.1	Tomato	cytosol	35.93	33.03
AT2G45160.1	Thale cress	cytosol	29.84	32.97
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	35.78	32.94
Bra000375.1-P	Field mustard	cytosol	28.15	32.78
CDX89065	Canola	nucleus	25.32	32.55
PGSC0003DMT400012104	Potato	plastid	31.4	31.71
CDY48367	Canola	cytosol	25.18	31.56
KRH76167	Soybean	cytosol	32.81	31.48
AT3G60630.1	Thale cress	cytosol	27.72	31.46
KRH65380	Soybean	cytosol	31.97	30.87
TraesCS4D01G110800.1	Wheat	cytosol	15.42	23.0
TraesCS4D01G216200.1	Wheat	cytosol	16.69	21.03

Protein Annotations

EnsemblPlants:TraesCS6D01G229400.1	EnsemblPlantsGene:TraesCS6D01G229400	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF64
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr6D:-:321774329..321776521

Molecular Weight (calculated)

73905.8 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.014

Length

707 amino acids

Sequence
(BLAST)

001: MRAALFGAER SGGVGLAGGG GGKDLCYWPP GKLLVEPRSV LDCSRRLSSP PNSASTLSSS LGGGAADSTG VAAVSESSAG DAEATKWADH GAGGGGCELP
101: PIPGALDGGE GWDAMLGNAA AAAAAGQDQT FLNWIMGAAG DLELPVPPLP MHQQPLVDNA GGFGFSSVDP LGFSLDHHLG GASSDLSSSG AMSHSTTGGG
201: GGGGSKASSA FGLFSPEAAS LQPPPPPMLF HEGIDTKPPL LGPQSHGLFN QYQHQHQHQP PPPAAAFFMP LASFSDHNQR SQLHQPPPKR HHSVPDDLYL
301: TRNHLGTSAA AAFPLLHGSL PFQLQPSPPP LRGAMKTTAA EAAQQQLLDE LAAAAKAAEA GNSTGAREIL ARLNHQLPPL GKPFLRSASY LREALLLALA
401: DGHHGASRIT SPLDVALKLA AYKSFSDLSP MLQFANFTAT QALLDEIACS AASCIHIIDF DLGVGGQWAS FMQELAHRRG TGGVALPLLK LTAFVSDASH
501: HPLELHLTQD NLTQFAADLG IPFEFNAVSL DAFSPAELIS PTGDEIVAVS LPVGCSARAP PLAVILRLVK QLGPKIVVAM DYGADRADLP FSQHFLHCFQ
601: SCMFLLDSLD AAGIDADSAC KIEKFLIQPR VEDAVLGRRK TDKAVSWRNV FAAAGFTPVP LSNLAEAQAD CLLKRVQVRG FHVEKRGVAL TLYWQRGELV
701: SVSAWRC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.