Factsheet for TraesCS1D01G212800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G054400.1
TraesCS5A01G124000.1
TraesCS5B01G062000.3
TraesCS5B01G123600.1
TraesCS5D01G065700.1
TraesCS5D01G131900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	TraesCS5A01G124000.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5B01G123600.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5D01G131900.1	AT1G72030.1	21798944
AT4G00150.1	TraesCS5A01G054400.1	AT1G60490.1	21798944
AT4G00150.1	TraesCS5B01G062000.3	AT1G60490.1	21798944
AT4G00150.1	TraesCS5D01G065700.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	99.03	98.4
TraesCS1B01G223400.1	Wheat	cytosol, plastid	98.55	98.08
HORVU1Hr1G053510.1	Barley	plastid	95.01	95.16
Os10t0551200-01	Rice	cytosol	54.59	85.18
EER91968	Sorghum	cytosol, mitochondrion	76.97	74.69
Zm00001d022162_P001	Maize	cytosol	19.81	74.55
Zm00001d029855_P001	Maize	mitochondrion	76.17	73.33
Zm00001d035873_P001	Maize	cytosol, plastid	33.17	72.03
Zm00001d042852_P001	Maize	cytosol	27.54	69.51
Zm00001d047957_P001	Maize	cytosol	13.85	66.67
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	35.75	62.71
Zm00001d031615_P001	Maize	cytosol	26.25	59.93
Zm00001d027569_P001	Maize	plastid	29.95	59.42
TraesCS4D01G360200.1	Wheat	cytosol	61.19	59.19
Zm00001d018956_P001	Maize	plastid	13.04	56.64
TraesCS7D01G011400.1	Wheat	plastid	36.07	42.11
GSMUA_Achr11P...	Banana	cytosol	39.77	41.51
TraesCS6D01G229400.1	Wheat	mitochondrion	45.89	40.31
GSMUA_Achr5P20860_001	Banana	cytosol	34.94	39.17
GSMUA_Achr8P11160_001	Banana	cytosol	41.06	38.23
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	11.11	37.91
VIT_02s0154g00400.t01	Wine grape	cytosol	30.27	36.72
AT4G00150.1	Thale cress	cytosol, plastid	32.69	36.38
Solyc08g078800.1.1	Tomato	plastid	27.38	35.87
GSMUA_Achr11P...	Banana	cytosol	39.13	35.12
CDY63062	Canola	cytosol, plastid	31.24	34.52
CDY63061	Canola	cytosol, plastid	31.24	34.52
Bra037319.1-P	Field mustard	cytosol, plastid	31.24	34.52
CDX95633	Canola	cytosol	28.99	32.49
CDX89065	Canola	nucleus	28.02	31.64
Bra003311.1-P	Field mustard	nucleus	25.76	31.62
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	38.81	31.38
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.13	31.35
Solyc01g090950.2.1	Tomato	cytosol	38.81	31.34
CDX83398	Canola	cytosol	29.63	31.19
AT3G60630.1	Thale cress	cytosol	30.76	30.66
CDY67934	Canola	cytosol	29.47	30.6
CDY48367	Canola	cytosol	27.7	30.5
Bra000375.1-P	Field mustard	cytosol	29.31	29.98
KRH75351	Soybean	cytosol	35.91	29.97
KRG88927	Soybean	cytosol	35.91	29.93
KRH76167	Soybean	cytosol	35.27	29.72
CDY56248	Canola	cytosol	28.5	29.45
PGSC0003DMT400012104	Potato	plastid	33.17	29.43
KRH65380	Soybean	cytosol	34.3	29.1
AT2G45160.1	Thale cress	cytosol	29.15	28.28
TraesCS4D01G110800.1	Wheat	cytosol	17.39	22.78
TraesCS4D01G216200.1	Wheat	cytosol	16.59	18.36

Protein Annotations

EnsemblPlants:TraesCS1D01G212800.1	EnsemblPlantsGene:TraesCS1D01G212800	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF125
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr1D:-:298444972..298446837

Molecular Weight (calculated)

65053.5 Da

IEP (calculated)

6.370

GRAVY (calculated)

0.001

Length

621 amino acids

Sequence
(BLAST)

001: MRGMPFGGEG HAGRLQQPKL SAGFWAEPTS VLDRRHSPSP SPPSEASALS SEVASLAPGG DGKNVSPPPQ QQAWPAGEDA AAGVKEEWAH QLAPLDMGMG
101: LGAGEGWDGT APPGLAGPDS TFLRWIIGGG EDASAGMAGV MDPPALELDH ATSMMSPPAA SLGPSLSPFA PAMEDAKGAP FGHAPSFLLH QHQHHPQPHA
201: AFFGAHPSFE SAPPPPKRHH PMAGAPAPKL PAFQGHLAPA GGFFPALKPK AGTANDEAAA TVDQLAEAAK FAEAGDAFGA REILARLNYR LPAAPAAGTP
301: LLRSAFYFKE ALRLALSPNG ETPAPPASTP YDVVLKLGAY KAFSEVSPVL QFAHLTCVQA VLDGLRGAGC IHVLDFDIGM GEQWASLMQE LAQRRPATAL
401: KVTALVSPAS HHPLELQLIH ENLSSFAAEL GVFFQFTVFN IDTLDPADLV AIAGGDALAV HLPVGAAHAA AMPAVLRLVK SLGAKVVVSV DRGCDRTELP
501: FAAHLFQAFQ STVFLLESVD AVGTDPDTAG KIERFLVQPA VEQCVVGRHR ASIEKAPLPW RAVFASAGFT PVQASTFAES QAESLLHKVP VRGFRVEKRA
601: PGSLCLYWQR AELVSVSAWR C

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.