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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, vacuole
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400018842
PGSC0003DMT400037096
PGSC0003DMT400084957

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 PGSC0003DMT400018842 AT1G72030.1 21798944
AT3G60630.1 PGSC0003DMT400037096 AT1G72030.1 21798944
AT3G60630.1 PGSC0003DMT400084957 AT1G72030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g090950.2.1 Tomato cytosol 97.92 97.79
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 64.45 63.87
AT4G00150.1 Thale cress cytosol, plastid 39.97 55.02
Bra037319.1-P Field mustard cytosol, plastid 38.15 52.14
CDY63062 Canola cytosol, plastid 38.15 52.14
CDY63061 Canola cytosol, plastid 38.15 52.14
KRG88927 Soybean cytosol 49.35 50.87
KRH75351 Soybean cytosol 49.22 50.81
KRH76167 Soybean cytosol 48.57 50.61
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 11.98 50.55
KRH65380 Soybean cytosol 47.79 50.14
Zm00001d022034_P001 Maize cytosol 19.53 49.02
AT3G60630.1 Thale cress cytosol 39.32 48.48
CDX89065 Canola nucleus 34.38 48.0
CDX95633 Canola cytosol 34.51 47.83
Bra003311.1-P Field mustard nucleus 30.73 46.64
CDY48367 Canola cytosol 34.24 46.63
GSMUA_Achr11P... Banana cytosol 35.55 45.88
CDX83398 Canola cytosol 35.16 45.76
GSMUA_Achr5P20860_001 Banana cytosol 32.55 45.13
Os10t0551200-01 Rice cytosol 23.31 44.97
GSMUA_Achr6P36740_001 Banana cytosol 27.86 44.86
CDY67934 Canola cytosol 34.9 44.82
Bra000375.1-P Field mustard cytosol 35.29 44.65
GSMUA_Achr1P05940_001 Banana plastid 30.47 44.32
CDY56248 Canola cytosol 34.51 44.09
AT2G45160.1 Thale cress cytosol 36.59 43.91
Zm00001d047957_P001 Maize cytosol 7.16 42.64
PGSC0003DMT400012104 Potato plastid 37.5 41.14
GSMUA_Achr8P11160_001 Banana cytosol 35.16 40.48
Zm00001d027292_P001 Maize peroxisome 24.61 39.29
HORVU1Hr1G053510.1 Barley plastid 31.64 39.19
TraesCS1D01G212800.1 Wheat cytosol 31.38 38.81
TraesCS1B01G223400.1 Wheat cytosol, plastid 31.38 38.62
TraesCS1A01G209400.1 Wheat mitochondrion, plastid 31.38 38.56
Zm00001d022162_P001 Maize cytosol 8.2 38.18
GSMUA_Achr11P... Banana cytosol 34.11 37.86
TraesCS7D01G011400.1 Wheat plastid 26.17 37.78
Zm00001d035873_P001 Maize cytosol, plastid 14.06 37.76
Zm00001d045589_P001 Maize cytosol 24.22 37.2
Os03t0103400-01 Rice cytosol 22.92 37.13
EER87695 Sorghum cytosol, plastid 24.74 37.04
Os06t0105350-00 Rice plastid 23.31 36.61
TraesCS4A01G482000.1 Wheat plastid 25.78 36.46
EER91968 Sorghum cytosol, mitochondrion 30.34 36.41
Os02t0662700-01 Rice cytosol 33.46 36.25
Zm00001d029855_P001 Maize mitochondrion 30.34 36.12
TraesCS5A01G535000.1 Wheat cytosol, mitochondrion, peroxisome, plastid 29.95 36.11
Zm00001d002718_P001 Maize cytosol 33.72 35.92
EES05768 Sorghum cytosol 33.46 35.89
HORVU6Hr1G063650.1 Barley cytosol, mitochondrion, nucleus, plasma membrane 32.81 35.85
TraesCS6D01G229400.1 Wheat mitochondrion 32.94 35.78
Os04t0555000-01 Rice cytosol 33.07 35.72
TraesCS4D01G360200.1 Wheat cytosol 29.82 35.67
TraesCS6A01G247200.1 Wheat mitochondrion 32.68 35.65
HORVU4Hr1G087700.2 Barley cytosol, mitochondrion, peroxisome, plastid 29.56 35.58
TraesCS6B01G277400.1 Wheat mitochondrion 32.42 35.57
TraesCS4B01G367300.1 Wheat cytosol 29.69 35.51
EES11245 Sorghum cytosol, nucleus, peroxisome 33.2 35.42
Zm00001d026158_P001 Maize cytosol 33.07 35.38
Zm00001d042852_P001 Maize cytosol 11.33 35.37
Os02t0663100-01 Rice cytosol 32.81 35.24
Zm00001d051387_P001 Maize cytosol 32.16 34.89
TraesCS7A01G014200.1 Wheat plastid 26.04 34.42
Zm00001d018956_P001 Maize plastid 6.38 34.27
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 31.38 34.14
Zm00001d027569_P001 Maize plastid 13.02 31.95
PGSC0003DMT400033037 Potato plastid 22.4 31.56
Zm00001d031615_P001 Maize cytosol 10.94 30.88
OQU85680 Sorghum mitochondrion 25.0 29.68
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 13.02 28.25
PGSC0003DMT400031475 Potato cytosol 15.76 24.4
PGSC0003DMT400010158 Potato cytosol 14.32 22.27
Protein Annotations
EnsemblPlants:PGSC0003DMT400066799EnsemblPlantsGene:PGSC0003DMG400025973EntrezGene:102606202GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRAS
PANTHER:PTHR31636PANTHER:PTHR31636:SF11PFAM:PF03514PFscan:PS50985PGSC:PGSC0003DMG400025973RefSeq:XP_006347894.1
SEG:segUniParc:UPI000295D6FBUniProt:M1CG75MapMan:15.5.12::
Description
GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400025973]
Coordinates
chr1:-:70243821..70246832
Molecular Weight (calculated)
83215.7 Da
IEP (calculated)
5.951
GRAVY (calculated)
-0.211
Length
768 amino acids
Sequence
(BLAST)
001: MKGMPLPFEF EGKGVLELDV LFNKNSILNS WNNHNSSKES SSCCYFVNSP SAVLDTIRSP RPINSSSTLS SSLGGGGGGG GGTASTDTAG GGGVAAVSAN
101: PSSKWQQQDN TTATSSNVGA ESELQQVQPP SSLEMGAASA AAATGGEKCA MEEWEGGLSE SVMASPCQEQ SILRWIMGDV DDPSMANLNK VLQVSGTGDY
201: EFNGGFGVVD QGFGVDPVGQ IGSFMPAISS SSSFPTNRMS SDKIGLVSNP PTNLPQNPIF PSLSNNLGPI AFGQTQQQPF ESTDLKPHSF NSQFLINQHQ
301: TQIPQNPSFL LPLPFAQHEQ NLVLPPQAKR HNPGTMGGLE PGSQISKGLF LDAGHQQPTP SQGLAHQLQL LPHFRPGAMG TKPKMVGEEM GQFHQLQQQQ
401: QQQQQAIIDQ LFKAAELVQT GNPVLAQGIL ARLNHQLSPI GKPFYRAAFY CKEALQLLLH ANTNNLNPSM ASSPFSLIFK IGAYKSFSEI SPVAQFANFT
501: CNQALLEVLD GFERIHIVDF DIGYGGQWAS LMQELALRSG GAPTLKITAL ASPSTHDQLE LGLTRENLIH FASEINMAFE FEILSIDSLN STSWSLPPLV
601: SENEAIAVNL PVSSLSSYQL SLPLVLRFVK QLSPRIVVSV DRGCDRTDLP FPNHVIQALQ SYSNLLESLD AVNVNFDALQ KIERFLLQPG IERIVMGRFR
701: SPEKTQHWRS LFLSSGFSPL SLSNFTESQA ECVVKRTPVR GFHVEKRQSS LVLCWQRKEL ISASAWRC
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.