Factsheet for PGSC0003DMT400037096

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400012712
PGSC0003DMT400023896
PGSC0003DMT400064306
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72030.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT1G72030.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT1G72030.1	PGSC0003DMT400064306	AT2G23290.1	21798944
AT1G72030.1	PGSC0003DMT400012712	AT4G08150.1	21798944
AT1G72030.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025710.2.1	Tomato	cytosol	92.2	92.53
VIT_18s0041g01190.t01	Wine grape	endoplasmic reticulum	10.64	65.22
GSMUA_Achr3P21890_001	Banana	cytosol	38.65	57.67
PGSC0003DMT400084957	Potato	cytosol, plastid	53.19	56.6
PGSC0003DMT400018842	Potato	plastid	52.84	54.58
VIT_18s0041g01220.t01	Wine grape	cytosol	49.65	48.78
KRH44932	Soybean	plastid	47.16	48.72
CDY36666	Canola	plastid	42.91	48.59
Bra003900.1-P	Field mustard	plastid	42.55	48.19
CDX68289	Canola	plastid	42.55	48.19
KRH23754	Soybean	plastid	44.68	46.49
AT1G72030.1	Thale cress	plastid	41.13	45.31
TraesCS5A01G124000.1	Wheat	plastid	43.62	42.56
Os07t0264800-01	Rice	plastid	44.33	42.52
TraesCS5B01G123600.1	Wheat	plastid	44.33	42.52
HORVU5Hr1G039960.1	Barley	plastid	43.26	41.5
TraesCS5D01G131900.1	Wheat	plastid	43.62	41.28
Zm00001d019343_P001	Maize	plastid	42.55	41.24
EER96202	Sorghum	plastid	42.91	40.74
VIT_18s0041g01150.t01	Wine grape	mitochondrion	19.86	34.15
HORVU6Hr1G023720.1	Barley	plastid	17.38	27.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400037096	EnsemblPlantsGene:PGSC0003DMG400014297	EntrezGene:102592477	Gene3D:3.40.630.30	GO:GO:0003674	GO:GO:0003824
GO:GO:0008080	GO:GO:0016740	InterPro:Acyl_CoA_acyltransferase	InterPro:GNAT_dom	InterPro:IPR000182	PANTHER:PTHR42919
PANTHER:PTHR42919:SF7	PFAM:PF00583	PFscan:PS51186	PGSC:PGSC0003DMG400014297	RefSeq:XP_015166768.1	SUPFAM:SSF55729
UniParc:UPI000296D36A	UniProt:M1B4T2	MapMan:35.2	:	:	:

Description

N-acetyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400014297]

Coordinates

chr3:+:43037922..43040664

Molecular Weight (calculated)

32499.0 Da

IEP (calculated)

8.539

GRAVY (calculated)

-0.288

Length

282 amino acids

Sequence
(BLAST)

001: MAQCQWQPHF QTRLKKDVSW KCRGLQCISI NRDKGKGIRN WKKRLQMPQC CSSSFPVSSI TTRELEVGLI NSEGKQRGEN EVGCFVNENG WKVRRMIETE
101: QEMRNVAAVQ AEAFYEPLLI FNDLFFQFFQ AEVLSGLLYR LKNSPPDRYA CLVAEASTDT PEVEQDLVGV VDATVYRDTD VLQFLPGATE YIYISGIAVL
201: NNFRRRKVAT ALLKACDVLA RFWSFEYLVL RAYEDDFGAR QLYTNAGYIV VSSDAPWKTT WIGRRRRVLM VKQVSPESTY IH

Best Arabidopsis Sequence Match ( AT1G72030.1 )
(BLAST)

001: MGHLPQSLYS AAGPKFPYPG SSGLGVDQRK LTWSRFPVFL RCASTESLTS LTQNNAAEIE LKYLVSQHGW DVRRLNRDDE DEIRRVSLVQ AEAFHIPLAL
101: FDDFFFMFFQ AEVLSALLYK LKNSPPDRYA CLVAEQTSET ETLSSSSVVG VVDVTAQTES SVLRYFPGVE EYLYVSGLAV SKSQRRKKMA STLLKACDVL
201: CYLWGFKLLA LRAYEDDAAA RNLYSNAGYS VVETDPLWTS TWIGRKRRVL MSKRFS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C7G6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.