Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0041g01190.t01 | Wine grape | endoplasmic reticulum | 18.64 | 71.74 |
| VIT_18s0041g01150.t01 | Wine grape | mitochondrion | 25.99 | 28.05 |
| HORVU5Hr1G039960.1 | Barley | plastid | 45.76 | 27.55 |
| Os07t0264800-01 | Rice | plastid | 39.55 | 23.81 |
| Zm00001d019343_P001 | Maize | plastid | 38.98 | 23.71 |
| CDX68289 | Canola | plastid | 30.51 | 21.69 |
| Bra003900.1-P | Field mustard | plastid | 30.51 | 21.69 |
| CDY36666 | Canola | plastid | 29.94 | 21.29 |
| EER96202 | Sorghum | plastid | 35.03 | 20.88 |
| AT1G72030.1 | Thale cress | plastid | 29.94 | 20.7 |
| GSMUA_Achr3P21890_001 | Banana | cytosol | 20.34 | 19.05 |
| PGSC0003DMT400037096 | Potato | cytosol, plastid | 27.68 | 17.38 |
| KRH23754 | Soybean | plastid | 26.55 | 17.34 |
| KRH44932 | Soybean | plastid | 25.99 | 16.85 |
| Solyc03g025710.2.1 | Tomato | cytosol | 26.55 | 16.73 |
| VIT_18s0041g01220.t01 | Wine grape | cytosol | 27.12 | 16.72 |
| Solyc11g020000.1.1 | Tomato | plastid | 19.21 | 16.19 |
| PGSC0003DMT400018842 | Potato | plastid | 19.21 | 12.45 |
| PGSC0003DMT400084957 | Potato | cytosol, plastid | 18.64 | 12.45 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G023720.1 | EnsemblPlantsGene:HORVU6Hr1G023720 | SEG:seg | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr6H:-:81473814..81474546
Molecular Weight (calculated)
18632.5 Da
IEP (calculated)
8.289
GRAVY (calculated)
-0.275
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: XHHHARNHSA VLPTPPPALP PPPLLPLPPP LPRQSHAVPH EAASPPQHCQ EQARSLLLSR PAALAAPRRS FLQEEDRLPC LPTKHQVGAV GGAEEERYLA
101: MEAEWGVRRM GRIGEEMRRV AFVQAEAFHV PVALFNDFFF DFFKAEVLAA LIYKLRNSPP DRIYQIIXXX XXXXXXX
101: MEAEWGVRRM GRIGEEMRRV AFVQAEAFHV PVALFNDFFF DFFKAEVLAA LIYKLRNSPP DRIYQIIXXX XXXXXXX
001: MGHLPQSLYS AAGPKFPYPG SSGLGVDQRK LTWSRFPVFL RCASTESLTS LTQNNAAEIE LKYLVSQHGW DVRRLNRDDE DEIRRVSLVQ AEAFHIPLAL
101: FDDFFFMFFQ AEVLSALLYK LKNSPPDRYA CLVAEQTSET ETLSSSSVVG VVDVTAQTES SVLRYFPGVE EYLYVSGLAV SKSQRRKKMA STLLKACDVL
201: CYLWGFKLLA LRAYEDDAAA RNLYSNAGYS VVETDPLWTS TWIGRKRRVL MSKRFS
101: FDDFFFMFFQ AEVLSALLYK LKNSPPDRYA CLVAEQTSET ETLSSSSVVG VVDVTAQTES SVLRYFPGVE EYLYVSGLAV SKSQRRKKMA STLLKACDVL
201: CYLWGFKLLA LRAYEDDAAA RNLYSNAGYS VVETDPLWTS TWIGRKRRVL MSKRFS
Arabidopsis Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C7G6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.