Factsheet for PGSC0003DMT400018842

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 3
peroxisome 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400012712
PGSC0003DMT400023896
PGSC0003DMT400064306
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72030.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT1G72030.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT1G72030.1	PGSC0003DMT400064306	AT2G23290.1	21798944
AT1G72030.1	PGSC0003DMT400012712	AT4G08150.1	21798944
AT1G72030.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037096	Potato	cytosol, plastid	54.58	52.84
GSMUA_Achr3P21890_001	Banana	cytosol	35.53	51.32
PGSC0003DMT400084957	Potato	cytosol, plastid	46.52	47.92
VIT_18s0041g01190.t01	Wine grape	endoplasmic reticulum	7.33	43.48
VIT_18s0041g01220.t01	Wine grape	cytosol	45.42	43.21
KRH23754	Soybean	plastid	41.76	42.07
KRH44932	Soybean	plastid	41.76	41.76
Bra003900.1-P	Field mustard	plastid	37.73	41.37
CDX68289	Canola	plastid	37.73	41.37
CDY36666	Canola	plastid	37.73	41.37
AT1G72030.1	Thale cress	plastid	38.46	41.02
Zm00001d019343_P001	Maize	plastid	37.0	34.71
TraesCS5A01G124000.1	Wheat	plastid	36.63	34.6
TraesCS5D01G131900.1	Wheat	plastid	37.73	34.56
Os07t0264800-01	Rice	plastid	37.0	34.35
TraesCS5B01G123600.1	Wheat	plastid	37.0	34.35
HORVU5Hr1G039960.1	Barley	plastid	36.63	34.01
EER96202	Sorghum	plastid	37.0	34.01
VIT_18s0041g01150.t01	Wine grape	mitochondrion	16.48	27.44
HORVU6Hr1G023720.1	Barley	plastid	12.45	19.21

Protein Annotations

EnsemblPlants:PGSC0003DMT400018842	EnsemblPlantsGene:PGSC0003DMG400007305	EntrezGene:102604545	Gene3D:3.40.630.30	GO:GO:0003674	GO:GO:0003824
GO:GO:0008080	GO:GO:0016740	InterPro:Acyl_CoA_acyltransferase	InterPro:GNAT_dom	InterPro:IPR000182	PANTHER:PTHR42919
PANTHER:PTHR42919:SF7	PFAM:PF00583	PFscan:PS51186	PGSC:PGSC0003DMG400007305	RefSeq:XP_006355862.1	SUPFAM:SSF55729
UniParc:UPI000296C3B6	UniProt:M1AB82	MapMan:35.2	:	:	:

Description

N-acetyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400007305]

Coordinates

chr6:+:84890..86108

Molecular Weight (calculated)

31077.3 Da

IEP (calculated)

9.535

GRAVY (calculated)

-0.370

Length

273 amino acids

Sequence
(BLAST)

001: MAAQCQWQPT SISTTLKKDG TCKQLSINRG RITFCNWRSK YLFPSPMTEQ CCTSTTTSFP VSSASARKIK SQRGDHQYEL VNENGWKVTR MNETTEQEMM
101: REVAVVRAKA FSQPIPFSKY LLFQDEQLSR LVYKLKNYKP DRYACLVAEA STDTPEVKQQ VVGVVDATVY SDDDVLQYLP GGTEYIYISG IAVLNKFRRQ
201: KVATALLKAC DVLARFWGFE YLVLRVNEDD FGAQRLYTNA GYKVVSGDAT CMTKWIGRRR RVLMIKQVSH GSA

Best Arabidopsis Sequence Match ( AT1G72030.1 )
(BLAST)

001: MGHLPQSLYS AAGPKFPYPG SSGLGVDQRK LTWSRFPVFL RCASTESLTS LTQNNAAEIE LKYLVSQHGW DVRRLNRDDE DEIRRVSLVQ AEAFHIPLAL
101: FDDFFFMFFQ AEVLSALLYK LKNSPPDRYA CLVAEQTSET ETLSSSSVVG VVDVTAQTES SVLRYFPGVE EYLYVSGLAV SKSQRRKKMA STLLKACDVL
201: CYLWGFKLLA LRAYEDDAAA RNLYSNAGYS VVETDPLWTS TWIGRKRRVL MSKRFS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C7G6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.