Factsheet for VIT_18s0041g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_07s0129g01050.t01
VIT_15s0021g02140.t01
VIT_16s0022g00510.t01
VIT_18s0001g08380.t01
VIT_18s0001g09850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72030.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT1G72030.1	VIT_07s0129g01050.t01	AT2G23290.1	21798944
AT1G72030.1	VIT_18s0001g09850.t01	AT2G23290.1	21798944
AT1G72030.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT1G72030.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT1G72030.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g01150.t01	Wine grape	mitochondrion	91.3	25.61
HORVU6Hr1G023720.1	Barley	plastid	71.74	18.64
GSMUA_Achr3P21890_001	Banana	cytosol	63.04	15.34
VIT_18s0041g01220.t01	Wine grape	cytosol	89.13	14.29
Bra003900.1-P	Field mustard	plastid	67.39	12.45
CDX68289	Canola	plastid	67.39	12.45
CDY36666	Canola	plastid	67.39	12.45
KRH23754	Soybean	plastid	67.39	11.44
TraesCS5A01G124000.1	Wheat	plastid	71.74	11.42
KRH44932	Soybean	plastid	67.39	11.36
AT1G72030.1	Thale cress	plastid	63.04	11.33
HORVU5Hr1G039960.1	Barley	plastid	71.74	11.22
TraesCS5B01G123600.1	Wheat	plastid	71.74	11.22
TraesCS5D01G131900.1	Wheat	plastid	71.74	11.07
Solyc03g025710.2.1	Tomato	cytosol	67.39	11.03
Zm00001d019343_P001	Maize	plastid	69.57	11.0
EER96202	Sorghum	plastid	69.57	10.77
PGSC0003DMT400037096	Potato	cytosol, plastid	65.22	10.64
Os07t0264800-01	Rice	plastid	67.39	10.54
Solyc11g020000.1.1	Tomato	plastid	43.48	9.52
PGSC0003DMT400084957	Potato	cytosol, plastid	43.48	7.55
PGSC0003DMT400018842	Potato	plastid	43.48	7.33

Protein Annotations

ArrayExpress:VIT_18s0041g01190	EMBL:FN596744	EnsemblPlants:VIT_18s0041g01190.t01	EnsemblPlantsGene:VIT_18s0041g01190	GO:GO:0003674	GO:GO:0003824
GO:GO:0004596	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006474
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0031248
ProteinID:CBI39297	ProteinID:CBI39297.3	UniParc:UPI0001BE4F66	UniProt:D7U983	MapMan:35.2	:

Description

No Description!

Coordinates

chr18:+:25820370..25821085

Molecular Weight (calculated)

5314.4 Da

IEP (calculated)

9.258

GRAVY (calculated)

-0.046

Length

46 amino acids

Sequence
(BLAST)

1: MRKVAHIQSQ AFHVPVALFN DLLFEFFQAE VPSGLVYKLR NSPPDR

Best Arabidopsis Sequence Match ( AT1G72030.1 )
(BLAST)

001: MGHLPQSLYS AAGPKFPYPG SSGLGVDQRK LTWSRFPVFL RCASTESLTS LTQNNAAEIE LKYLVSQHGW DVRRLNRDDE DEIRRVSLVQ AEAFHIPLAL
101: FDDFFFMFFQ AEVLSALLYK LKNSPPDRYA CLVAEQTSET ETLSSSSVVG VVDVTAQTES SVLRYFPGVE EYLYVSGLAV SKSQRRKKMA STLLKACDVL
201: CYLWGFKLLA LRAYEDDAAA RNLYSNAGYS VVETDPLWTS TWIGRKRRVL MSKRFS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C7G6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.