Factsheet for PGSC0003DMT400084957

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400012712
PGSC0003DMT400023896
PGSC0003DMT400064306
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72030.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT1G72030.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT1G72030.1	PGSC0003DMT400064306	AT2G23290.1	21798944
AT1G72030.1	PGSC0003DMT400012712	AT4G08150.1	21798944
AT1G72030.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g020000.1.1	Tomato	plastid	66.04	83.33
PGSC0003DMT400037096	Potato	cytosol, plastid	56.6	53.19
GSMUA_Achr3P21890_001	Banana	cytosol	35.85	50.26
PGSC0003DMT400018842	Potato	plastid	47.92	46.52
VIT_18s0041g01190.t01	Wine grape	endoplasmic reticulum	7.55	43.48
KRH44932	Soybean	plastid	42.26	41.03
VIT_18s0041g01220.t01	Wine grape	cytosol	42.26	39.02
KRH23754	Soybean	plastid	39.62	38.75
CDX68289	Canola	plastid	35.85	38.15
Bra003900.1-P	Field mustard	plastid	35.47	37.75
CDY36666	Canola	plastid	35.09	37.35
AT1G72030.1	Thale cress	plastid	35.09	36.33
Zm00001d019343_P001	Maize	plastid	38.87	35.4
TraesCS5B01G123600.1	Wheat	plastid	38.49	34.69
HORVU5Hr1G039960.1	Barley	plastid	38.49	34.69
TraesCS5A01G124000.1	Wheat	plastid	37.74	34.6
TraesCS5D01G131900.1	Wheat	plastid	38.11	33.89
Os07t0264800-01	Rice	plastid	37.36	33.67
EER96202	Sorghum	plastid	37.74	33.67
VIT_18s0041g01150.t01	Wine grape	mitochondrion	14.34	23.17
HORVU6Hr1G023720.1	Barley	plastid	12.45	18.64

Protein Annotations

EnsemblPlants:PGSC0003DMT400084957	EnsemblPlantsGene:PGSC0003DMG400034528	Gene3D:3.40.630.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0008080
GO:GO:0016740	InterPro:Acyl_CoA_acyltransferase	InterPro:GNAT_dom	InterPro:IPR000182	PANTHER:PTHR42919	PANTHER:PTHR42919:SF7
PFAM:PF00583	PFscan:PS51186	PGSC:PGSC0003DMG400034528	SEG:seg	SUPFAM:SSF55729	UniParc:UPI00029605DA
UniProt:M1D8G0	MapMan:35.2	:	:	:	:

Description

N-acetyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400034528]

Coordinates

chr11:-:12725752..12726839

Molecular Weight (calculated)

30997.2 Da

IEP (calculated)

7.241

GRAVY (calculated)

-0.351

Length

265 amino acids

Sequence
(BLAST)

001: MAQCQLNFQK EISWKCRVSI NRVTRICCFP KRLQIAECCD RQSFPLPLTT TSTTRRSIEE VKSQRSNEYE MNDLWKVRRV IESEEEMMEV AAIQADAFYE
101: QEMMEVYSND FFFQFFKVEQ FSNLYYRLKH YAPDRYACLV AEAASSDEEE QHLVGVIDAT VNEDKDILQY LPLATKYIYI SGIAVLTKFR RQKVGTALLK
201: ACDVLARVWG IEYLVLKAYE DDFGARKLYT NAGYKLVSAD APSKTRWIPE RRRVLMVKQV SHEST

Best Arabidopsis Sequence Match ( AT1G72030.1 )
(BLAST)

001: MGHLPQSLYS AAGPKFPYPG SSGLGVDQRK LTWSRFPVFL RCASTESLTS LTQNNAAEIE LKYLVSQHGW DVRRLNRDDE DEIRRVSLVQ AEAFHIPLAL
101: FDDFFFMFFQ AEVLSALLYK LKNSPPDRYA CLVAEQTSET ETLSSSSVVG VVDVTAQTES SVLRYFPGVE EYLYVSGLAV SKSQRRKKMA STLLKACDVL
201: CYLWGFKLLA LRAYEDDAAA RNLYSNAGYS VVETDPLWTS TWIGRKRRVL MSKRFS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C7G6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.