Factsheet for VIT_18s0041g01150.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_07s0129g01050.t01
VIT_15s0021g02140.t01
VIT_16s0022g00510.t01
VIT_18s0001g08380.t01
VIT_18s0001g09850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72030.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT1G72030.1	VIT_07s0129g01050.t01	AT2G23290.1	21798944
AT1G72030.1	VIT_18s0001g09850.t01	AT2G23290.1	21798944
AT1G72030.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT1G72030.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT1G72030.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g01190.t01	Wine grape	endoplasmic reticulum	25.61	91.3
VIT_18s0041g01220.t01	Wine grape	cytosol	89.63	51.22
HORVU6Hr1G023720.1	Barley	plastid	28.05	25.99
KRH44932	Soybean	plastid	38.41	23.08
KRH23754	Soybean	plastid	35.37	21.4
Solyc03g025710.2.1	Tomato	cytosol	34.76	20.28
Bra003900.1-P	Field mustard	plastid	30.49	20.08
CDX68289	Canola	plastid	30.49	20.08
PGSC0003DMT400037096	Potato	cytosol, plastid	34.15	19.86
CDY36666	Canola	plastid	29.88	19.68
AT1G72030.1	Thale cress	plastid	29.27	18.75
HORVU5Hr1G039960.1	Barley	plastid	32.32	18.03
TraesCS5D01G131900.1	Wheat	plastid	32.32	17.79
Os07t0264800-01	Rice	plastid	31.71	17.69
Zm00001d019343_P001	Maize	plastid	31.1	17.53
TraesCS5A01G124000.1	Wheat	plastid	30.49	17.3
Solyc11g020000.1.1	Tomato	plastid	21.95	17.14
TraesCS5B01G123600.1	Wheat	plastid	30.49	17.01
GSMUA_Achr3P21890_001	Banana	cytosol	19.51	16.93
EER96202	Sorghum	plastid	29.88	16.5
PGSC0003DMT400018842	Potato	plastid	27.44	16.48
PGSC0003DMT400084957	Potato	cytosol, plastid	23.17	14.34

Protein Annotations

MapMan:35.2	ProteinID:CCB61682	ProteinID:CCB61682.1	UniProt:F6I3V9	EMBL:FN596744	GO:GO:0003674
GO:GO:0003824	GO:GO:0004596	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0006474	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0031248	PANTHER:PTHR23091	PANTHER:PTHR23091:SF221	UniParc:UPI0002108905	ArrayExpress:VIT_18s0041g01150	EnsemblPlantsGene:VIT_18s0041g01150
EnsemblPlants:VIT_18s0041g01150.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:25780512..25781205

Molecular Weight (calculated)

18708.5 Da

IEP (calculated)

9.998

GRAVY (calculated)

-0.425

Length

164 amino acids

Sequence
(BLAST)

001: MPRIMASFHS KTAPVFQKYY TEPSCRYTRI NNGRIGIKGC GRSWRINIEK GRLFKGERGF VVQCCSSSST PSAEDQRVLR LVGKVALSEK TEYGKGQFGC
101: LVNEYGWKVR RLVEEDGEMR KVAQVQAQAF HVPVALFNDL FFEFFQAEVP SGLVYKLRNS PPDR

Best Arabidopsis Sequence Match ( AT1G72030.1 )
(BLAST)

001: MGHLPQSLYS AAGPKFPYPG SSGLGVDQRK LTWSRFPVFL RCASTESLTS LTQNNAAEIE LKYLVSQHGW DVRRLNRDDE DEIRRVSLVQ AEAFHIPLAL
101: FDDFFFMFFQ AEVLSALLYK LKNSPPDRYA CLVAEQTSET ETLSSSSVVG VVDVTAQTES SVLRYFPGVE EYLYVSGLAV SKSQRRKKMA STLLKACDVL
201: CYLWGFKLLA LRAYEDDAAA RNLYSNAGYS VVETDPLWTS TWIGRKRRVL MSKRFS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C7G6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.