Factsheet for VIT_18s0041g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_07s0129g01050.t01
VIT_15s0021g02140.t01
VIT_16s0022g00510.t01
VIT_18s0001g08380.t01
VIT_18s0001g09850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72030.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT1G72030.1	VIT_07s0129g01050.t01	AT2G23290.1	21798944
AT1G72030.1	VIT_18s0001g09850.t01	AT2G23290.1	21798944
AT1G72030.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT1G72030.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT1G72030.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g01150.t01	Wine grape	mitochondrion	51.22	89.63
VIT_18s0041g01190.t01	Wine grape	endoplasmic reticulum	14.29	89.13
GSMUA_Achr3P21890_001	Banana	cytosol	41.12	62.43
KRH44932	Soybean	plastid	53.31	56.04
KRH23754	Soybean	plastid	51.92	54.98
Bra003900.1-P	Field mustard	plastid	45.3	52.21
CDX68289	Canola	plastid	45.3	52.21
CDY36666	Canola	plastid	44.6	51.41
AT1G72030.1	Thale cress	plastid	44.95	50.39
Solyc03g025710.2.1	Tomato	cytosol	48.78	49.82
PGSC0003DMT400037096	Potato	cytosol, plastid	48.78	49.65
PGSC0003DMT400018842	Potato	plastid	43.21	45.42
Zm00001d019343_P001	Maize	plastid	44.25	43.64
PGSC0003DMT400084957	Potato	cytosol, plastid	39.02	42.26
Os07t0264800-01	Rice	plastid	43.21	42.18
EER96202	Sorghum	plastid	43.21	41.75
TraesCS5A01G124000.1	Wheat	plastid	41.46	41.18
TraesCS5B01G123600.1	Wheat	plastid	41.81	40.82
HORVU5Hr1G039960.1	Barley	plastid	41.81	40.82
TraesCS5D01G131900.1	Wheat	plastid	41.81	40.27
Solyc11g020000.1.1	Tomato	plastid	28.22	38.57
HORVU6Hr1G023720.1	Barley	plastid	16.72	27.12

Protein Annotations

EntrezGene:100244789	wikigene:100244789	Gene3D:3.40.630.30	MapMan:35.2	UniProt:A5AT20	EMBL:AM434497
InterPro:Acyl_CoA_acyltransferase	ProteinID:CAN78264	ProteinID:CAN78264.1	ProteinID:CBI39295	ProteinID:CBI39295.3	EMBL:FN596744
InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008080	GO:GO:0016740	InterPro:IPR000182	EntrezGene:LOC100244789	wikigene:LOC100244789
PFAM:PF00583	PFscan:PS51186	PANTHER:PTHR42919	PANTHER:PTHR42919:SF7	SUPFAM:SSF55729	UniParc:UPI000151F646
ArrayExpress:VIT_18s0041g01220	EnsemblPlantsGene:VIT_18s0041g01220	EnsemblPlants:VIT_18s0041g01220.t01	unigene:Vvi.2948	RefSeq:XP_002280208	RefSeq:XP_002280208.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:25838008..25839742

Molecular Weight (calculated)

32076.5 Da

IEP (calculated)

9.133

GRAVY (calculated)

-0.238

Length

287 amino acids

Sequence
(BLAST)

001: MASFHSKTAP VFQKHYTEPS CRYTGINNGG IGIKGCGKSW RINIGKTRLF KGGRGSVVQC CSSSSTPSAE DQRVLRLVGK VGLREKPEYG KDQFGCLVNE
101: YGWKVRRLVE EDGEMRKVAQ VQAQAFHVPV ALFNDLFFEF FQAEVLSGLV YKLRNSPPDR YACLVAEPAA ETQQEVVGVV DVTALRDEAV LQHLGGAEEY
201: LYVSGIAVLN DFRRQKVATA LLKACDMLSI LWGFEYLVLR AYEDDLGARK LYSNSGYSVV SGDPPWTSTW LGKKRRVVMV KRSNLRE

Best Arabidopsis Sequence Match ( AT1G72030.1 )
(BLAST)

001: MGHLPQSLYS AAGPKFPYPG SSGLGVDQRK LTWSRFPVFL RCASTESLTS LTQNNAAEIE LKYLVSQHGW DVRRLNRDDE DEIRRVSLVQ AEAFHIPLAL
101: FDDFFFMFFQ AEVLSALLYK LKNSPPDRYA CLVAEQTSET ETLSSSSVVG VVDVTAQTES SVLRYFPGVE EYLYVSGLAV SKSQRRKKMA STLLKACDVL
201: CYLWGFKLLA LRAYEDDAAA RNLYSNAGYS VVETDPLWTS TWIGRKRRVL MSKRFS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C7G6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.