Factsheet for VIT_07s0129g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0208g00020.t01
VIT_03s0091g00480.t01
VIT_05s0020g03180.t01
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_07s0141g00610.t01
VIT_07s0151g01000.t01
VIT_07s0205g00030.t01
VIT_08s0007g02790.t01
VIT_08s0007g07790.t01
VIT_08s0040g00470.t01
VIT_08s0056g00160.t01
VIT_14s0219g00290.t01
VIT_15s0045g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23290.1	VIT_03s0091g00480.t01	AT1G49850.1	21798944
AT2G23290.1	VIT_07s0141g00610.t01	AT2G30580.1	21798944
AT2G23290.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT2G23290.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT2G23290.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT2G23290.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT2G23290.1	VIT_08s0007g07790.t01	AT2G42260.1	21798944
AT2G23290.1	VIT_14s0219g00290.t01	AT3G01690.1	21798944
AT2G23290.1	VIT_00s0208g00020.t01	AT3G09630.1	21798944
AT2G23290.1	VIT_15s0045g00110.t01	AT3G09630.1	21798944
AT2G23290.1	VIT_08s0007g02790.t01	AT3G11590.1	21798944
AT2G23290.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT2G23290.1	VIT_05s0020g03180.t01	AT4G02770.1	21798944
AT2G23290.1	VIT_07s0151g01000.t01	AT4G02770.1	21798944
AT2G23290.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT2G23290.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT2G23290.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT2G23290.1	VIT_07s0205g00030.t01	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28419	Soybean	nucleus	65.06	68.35
KRH77058	Soybean	nucleus	66.35	67.87
VIT_18s0001g09850.t01	Wine grape	nucleus	65.06	64.86
KRH57983	Soybean	nucleus	58.33	61.69
PGSC0003DMT400008569	Potato	nucleus	59.29	57.81
CDY22442	Canola	nucleus	50.64	57.45
Os09t0106700-01	Rice	nucleus	57.69	56.43
Solyc04g078420.1.1	Tomato	nucleus	59.29	56.4
CDY44045	Canola	nucleus	51.28	56.14
CDY38933	Canola	nucleus	52.24	55.82
Bra032176.1-P	Field mustard	nucleus	52.24	55.82
CDX89554	Canola	nucleus	51.92	55.29
CDX75635	Canola	nucleus	52.88	55.18
Zm00001d005300_P001	Maize	nucleus	50.0	54.74
CDY29542	Canola	nucleus	46.47	54.72
CDX72621	Canola	nucleus	46.47	54.72
Bra017813.1-P	Field mustard	nucleus	46.47	54.72
CDX69287	Canola	nucleus	52.88	53.92
TraesCS5B01G157300.1	Wheat	nucleus	57.69	53.73
Solyc02g092930.1.1	Tomato	nucleus	61.54	53.19
PGSC0003DMT400064306	Potato	mitochondrion, nucleus	63.14	53.1
Bra010593.1-P	Field mustard	nucleus	51.6	52.79
TraesCS5A01G159600.1	Wheat	nucleus	56.41	52.38
AT2G23290.1	Thale cress	nucleus	51.28	51.78
VIT_03s0180g00210.t01	Wine grape	nucleus	50.0	51.49
TraesCS5D01G164600.1	Wheat	nucleus	56.41	51.31
Zm00001d019712_P001	Maize	nucleus	56.41	51.01
AT4G37260.1	Thale cress	nucleus	52.24	50.94
Bra011749.1-P	Field mustard	nucleus	52.88	50.3
EER98550	Sorghum	nucleus	57.69	49.18
VIT_18s0001g11170.t01	Wine grape	nucleus	30.77	41.92
VIT_13s0067g01360.t01	Wine grape	nucleus	33.33	41.11
HORVU5Hr1G049880.1	Barley	plastid	55.13	40.57
VIT_13s0019g03200.t01	Wine grape	nucleus	36.54	30.16
VIT_17s0000g01890.t01	Wine grape	nucleus	21.15	29.86
VIT_08s0007g01540.t01	Wine grape	nucleus	37.82	28.78
VIT_18s0001g15260.t01	Wine grape	nucleus	24.36	23.68
VIT_04s0044g01380.t01	Wine grape	nucleus	21.79	22.52
VIT_08s0056g01190.t01	Wine grape	golgi	25.32	17.71
VIT_01s0026g02600.t01	Wine grape	nucleus	25.64	17.51
VIT_14s0108g01010.t01	Wine grape	nucleus	21.79	14.29

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100233128	wikigene:100233128	MapMan:15.5.2.1	ProteinID:AAY28930	ProteinID:AAY28930.1
EMBL:AY953543	ProteinID:CCB57797	ProteinID:CCB57797.1	UniProt:F6HSY7	EMBL:FN596246	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF940	InterPro:SANT/Myb	SMART:SM00717	EntrezGene:SREBP	wikigene:SREBP
SUPFAM:SSF46689	TIGR:TC62435	UniParc:UPI00015CA298	ArrayExpress:VIT_07s0129g01050	EnsemblPlantsGene:VIT_07s0129g01050	EnsemblPlants:VIT_07s0129g01050.t01
unigene:Vvi.436	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:16208311..16209614

Molecular Weight (calculated)

33821.2 Da

IEP (calculated)

9.052

GRAVY (calculated)

-0.476

Length

312 amino acids

Sequence
(BLAST)

001: MAATRKDVDR IKGPWSPEED DALQKLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP QVEHRAFTSE EDDTIMRAHA RFGNKWATIA RLLSGRTDNA
101: IKNHWNSTLK RKCSAITEDG SFGGDYPPHP LKRSVSAGAA APVSGLYLSP SSPCGSDVSD SSLPVVSSSH VYRPVARTGG IIPPETTSSS NDPPTSLSLS
201: LPGVDSCEVS NRAPEPNHAP PANPIQMIPT MAPLQQIPMH QHNQPATVPA TVLSQGEKPF IPFSAELLAV MQEMIRKEVR NYMAGLEQNG VCLQADGIRN
301: AAVKRIGISK IE

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.