CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90739
EER93246
EER95307
EES01631
EES03779
EES06648
EES06968
EES09201
EES10850
EES11990
EES16322
KXG19536
KXG23810
KXG30263
KXG33416
KXG34535
KXG37587
KXG37588
KXG37592
KXG37982
OQU78227
OQU79022
OQU79520
OQU81040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23290.1	EER95307	AT1G49850.1	21798944
AT2G23290.1	KXG23810	AT1G49850.1	21798944
AT2G23290.1	KXG37592	AT2G30580.1	21798944
AT2G23290.1	KXG37982	AT2G30580.1	21798944
AT2G23290.1	OQU79520	AT2G30580.1	21798944
AT2G23290.1	EES01631	AT2G41090.1	17360592
AT2G23290.1	EES09201	AT2G41090.1	17360592
AT2G23290.1	EES16322	AT2G41090.1	17360592
AT2G23290.1	OQU78227	AT2G41090.1	17360592
AT2G23290.1	EES01631	AT2G41100.1	17360592
AT2G23290.1	EES09201	AT2G41100.1	17360592
AT2G23290.1	EES16322	AT2G41100.1	17360592
AT2G23290.1	OQU78227	AT2G41100.1	17360592
AT2G23290.1	OQU79022	AT3G01690.1	21798944
AT2G23290.1	EER90739	AT3G09630.1	21798944
AT2G23290.1	KXG34535	AT3G09630.1	21798944
AT2G23290.1	EES11990	AT3G11590.1	21798944
AT2G23290.1	KXG30263	AT3G11590.1	21798944
AT2G23290.1	EES03779	AT3G60360.1	21798944
AT2G23290.1	EER93246	AT4G02770.1	21798944
AT2G23290.1	KXG37587	AT4G14640.1	17360592
AT2G23290.1	KXG37588	AT4G14640.1	17360592
AT2G23290.1	EES01631	AT5G21274.1	17360592
AT2G23290.1	EES09201	AT5G21274.1	17360592
AT2G23290.1	EES16322	AT5G21274.1	17360592
AT2G23290.1	OQU78227	AT5G21274.1	17360592
AT2G23290.1	OQU81040	AT5G65683.1	21798944
AT3G50060.1	EES06968	AT1G59750.1	17675404
AT3G50060.1	EES10850	AT1G59750.1	17675404
AT3G50060.1	EES06648	AT3G16120.1	21798944
AT3G50060.1	KXG33416	AT3G16120.1	21798944
AT3G50060.1	KXG19536	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019712_P001	Maize	nucleus	86.34	91.59
TraesCS5B01G157300.1	Wheat	nucleus	70.49	77.01
TraesCS5A01G159600.1	Wheat	nucleus	70.22	76.49
Os09t0106700-01	Rice	nucleus	65.85	75.55
TraesCS5D01G164600.1	Wheat	nucleus	70.22	74.93
GSMUA_Achr4P20150_001	Banana	nucleus	44.54	60.59
KRH05621	Soybean	nucleus	43.44	59.33
VIT_07s0129g01050.t01	Wine grape	nucleus	49.18	57.69
HORVU5Hr1G049880.1	Barley	plastid	66.67	57.55
VIT_18s0001g09850.t01	Wine grape	nucleus	48.63	56.87
KRH15420	Soybean	nucleus	42.35	56.78
GSMUA_Achr1P26140_001	Banana	nucleus	43.44	56.38
KRH61351	Soybean	nucleus	39.89	56.37
KRH57983	Soybean	nucleus	45.36	56.27
GSMUA_Achr3P13070_001	Banana	nucleus	44.26	55.86
KRH28419	Soybean	nucleus	44.26	54.55
KRH77058	Soybean	nucleus	45.36	54.43
CDY22442	Canola	nucleus	40.44	53.82
GSMUA_Achr1P09750_001	Banana	nucleus	43.44	53.54
PGSC0003DMT400008569	Potato	nucleus	46.72	53.44
VIT_03s0180g00210.t01	Wine grape	nucleus	43.72	52.81
Solyc04g078420.1.1	Tomato	nucleus	47.27	52.74
Bra032176.1-P	Field mustard	nucleus	41.8	52.4
CDY38933	Canola	nucleus	41.8	52.4
CDY44045	Canola	nucleus	40.71	52.28
GSMUA_AchrUn_...	Banana	nucleus	40.16	51.94
GSMUA_Achr4P09450_001	Banana	nucleus	42.62	51.66
CDX89554	Canola	nucleus	41.26	51.54
GSMUA_Achr9P22600_001	Banana	nucleus	40.44	51.39
GSMUA_Achr3P28230_001	Banana	nucleus	40.44	51.39
GSMUA_Achr4P12950_001	Banana	nucleus	37.16	51.13
CDY12830	Canola	nucleus	35.25	50.99
GSMUA_Achr8P25220_001	Banana	nucleus	40.44	50.0
Bra012149.1-P	Field mustard	nucleus	40.16	49.66
Bra010593.1-P	Field mustard	nucleus	40.71	48.85
CDX75635	Canola	nucleus	39.89	48.83
CDX72621	Canola	nucleus	35.25	48.68
CDY29542	Canola	nucleus	35.25	48.68
Bra017813.1-P	Field mustard	nucleus	35.25	48.68
CDY01420	Canola	nucleus	34.97	48.67
CDY23023	Canola	nucleus	38.52	48.62
Solyc02g092930.1.1	Tomato	nucleus	47.27	47.92
PGSC0003DMT400064306	Potato	mitochondrion, nucleus	48.36	47.71
AT2G23290.1	Thale cress	nucleus	40.16	47.57
AT5G67300.1	Thale cress	nucleus	39.62	47.54
CDY02098	Canola	nucleus	37.98	47.44
Bra012910.1-P	Field mustard	nucleus	37.98	47.44
CDX69287	Canola	nucleus	39.34	47.06
EES04668	Sorghum	nucleus	41.8	46.79
EER90085	Sorghum	nucleus	39.89	46.65
CDY57355	Canola	nucleus	35.25	46.4
Bra036048.1-P	Field mustard	nucleus	33.61	46.24
CDY30608	Canola	nucleus	33.33	46.04
AT3G50060.1	Thale cress	nucleus	37.43	45.51
AT4G37260.1	Thale cress	nucleus	39.34	45.0
Bra011749.1-P	Field mustard	nucleus	39.89	44.51
Bra029990.1-P	Field mustard	nucleus	34.97	43.54
OQU75658	Sorghum	nucleus	29.23	37.54
CDX68566	Canola	nucleus	31.15	36.31
EES18041	Sorghum	nucleus	31.15	31.93
EES13945	Sorghum	nucleus	19.13	31.11
EES02760	Sorghum	nucleus	20.49	28.09
EES02759	Sorghum	nucleus	21.31	27.66
EER93554	Sorghum	nucleus	18.03	27.62
EES02758	Sorghum	nucleus	22.13	26.73
EES15780	Sorghum	nucleus	17.21	25.0
EES09660	Sorghum	nucleus	18.58	24.64
OQU87862	Sorghum	nucleus	25.68	23.56
OQU80507	Sorghum	nucleus	20.77	11.13

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8063857	UniProt:C5X6Q8	EnsemblPlants:EER98550	ProteinID:EER98550
ProteinID:EER98550.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF940	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3002G141300	SUPFAM:SSF46689	unigene:Sbi.1608	UniParc:UPI0001A84258	RefSeq:XP_002462029.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:22960129..22961991

Molecular Weight (calculated)

38987.0 Da

IEP (calculated)

9.550

GRAVY (calculated)

-0.618

Length

366 amino acids

Sequence
(BLAST)

001: MASSSPSCRG GGNKADVDRI KGPWSPEEDE ALQRLVARHG ARNWSLISRS IPGRSGKSCR LRWCNQLSPQ VEHRPFTPEE DDTILRAHAR FGNKWATIAR
101: LLSGRTDNAI KNHWNSTLKR KYYAASAADG DAANGGAADA DDERPLKRTS SDGHPGLCFS PGSPSGSDLS DSSHHSLPSV MPSAASAAAA AVTSQQQQQQ
201: HVYRPVPRAG GVVVLPVAPP LAPRPPSPPP PPPPQQQPPP ATSLSLSLSL PGLDQQPEPS PATAPPQPPV QIHQHQAAPP QMPPPPPQAQ PSPRLPFQLQ
301: PAPATNLTSP QPAAAAPFSS EFLLMMQEMI RIEVRNYMSG SGFDPRADGA SVHAVTKRMM GMAKIE

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.