Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P22600_001 | Banana | nucleus | 55.21 | 55.21 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 50.35 | 53.9 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 49.65 | 53.76 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 50.0 | 51.06 |
| Zm00001d005300_P001 | Maize | nucleus | 49.65 | 50.18 |
| KRH61351 | Soybean | nucleus | 44.79 | 49.81 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 50.0 | 49.66 |
| KRH05621 | Soybean | nucleus | 45.83 | 49.25 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 48.96 | 47.47 |
| CDY12830 | Canola | nucleus | 41.67 | 47.43 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 48.96 | 46.69 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 47.92 | 46.62 |
| CDY01420 | Canola | nucleus | 42.36 | 46.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.49 | 46.29 |
| Os09t0106700-01 | Rice | nucleus | 50.69 | 45.77 |
| KRH15420 | Soybean | nucleus | 43.06 | 45.42 |
| Bra012149.1-P | Field mustard | nucleus | 46.18 | 44.93 |
| AT5G67300.1 | Thale cress | nucleus | 46.88 | 44.26 |
| CDY57355 | Canola | nucleus | 42.01 | 43.53 |
| CDY30608 | Canola | nucleus | 39.93 | 43.4 |
| Bra036048.1-P | Field mustard | nucleus | 39.93 | 43.23 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 45.14 | 42.9 |
| CDY23023 | Canola | nucleus | 43.06 | 42.76 |
| Zm00001d019712_P001 | Maize | nucleus | 50.69 | 42.32 |
| Bra012910.1-P | Field mustard | nucleus | 42.71 | 41.98 |
| CDY02098 | Canola | nucleus | 42.71 | 41.98 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 48.61 | 41.79 |
| AT3G50060.1 | Thale cress | nucleus | 43.4 | 41.53 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 48.26 | 41.37 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 48.61 | 40.82 |
| EER98550 | Sorghum | nucleus | 51.39 | 40.44 |
| Bra029990.1-P | Field mustard | nucleus | 39.58 | 38.78 |
| GSMUA_Achr3P16490_001 | Banana | nucleus | 22.22 | 38.1 |
| GSMUA_Achr6P33470_001 | Banana | nucleus | 27.43 | 35.11 |
| CDX68566 | Canola | nucleus | 35.76 | 32.8 |
| HORVU5Hr1G049880.1 | Barley | plastid | 47.22 | 32.08 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 22.57 | 30.95 |
| GSMUA_Achr9P03720_001 | Banana | nucleus | 33.68 | 30.12 |
| GSMUA_Achr11P... | Banana | nucleus | 19.1 | 30.05 |
| GSMUA_Achr3P07700_001 | Banana | nucleus | 20.83 | 29.27 |
| GSMUA_Achr9P15750_001 | Banana | nucleus | 20.49 | 27.96 |
| GSMUA_Achr6P17630_001 | Banana | nucleus | 23.96 | 26.24 |
| GSMUA_Achr10P... | Banana | nucleus | 23.26 | 25.77 |
| GSMUA_Achr9P08480_001 | Banana | nucleus | 22.22 | 25.0 |
| GSMUA_Achr3P18970_001 | Banana | nucleus | 21.88 | 24.05 |
| GSMUA_Achr6P15900_001 | Banana | nucleus | 22.92 | 24.0 |
| GSMUA_Achr5P27750_001 | Banana | nucleus | 20.14 | 23.02 |
| GSMUA_Achr5P28780_001 | Banana | nucleus | 31.6 | 22.92 |
| GSMUA_Achr5P23290_001 | Banana | nucleus | 23.96 | 22.85 |
| GSMUA_Achr9P04990_001 | Banana | nucleus | 23.61 | 22.52 |
| GSMUA_Achr11P... | Banana | nucleus | 21.18 | 22.18 |
| GSMUA_Achr10P... | Banana | nucleus | 22.92 | 21.71 |
| GSMUA_Achr3P09490_001 | Banana | nucleus | 23.26 | 21.0 |
| GSMUA_Achr9P17000_001 | Banana | nucleus | 21.88 | 20.72 |
| GSMUA_Achr10P... | Banana | nucleus | 22.92 | 20.56 |
| GSMUA_Achr6P32250_001 | Banana | nucleus | 24.65 | 20.52 |
| GSMUA_Achr6P02580_001 | Banana | nucleus | 25.0 | 20.34 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 23.96 | 17.51 |
| GSMUA_Achr7P18390_001 | Banana | nucleus, plastid | 22.57 | 13.83 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P28230_001 | EnsemblPlants:GSMUA_Achr3T28230_001 | EnsemblPlantsGene:GSMUA_Achr3G28230_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF940 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002961A4B | UniProt:M0SII9 | MapMan:15.5.2.1 | : | : |
Description
Putative Transcription factor MYB44 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28230_001]
Coordinates
chr3:-:27580987..27581916
Molecular Weight (calculated)
32109.3 Da
IEP (calculated)
8.914
GRAVY (calculated)
-0.857
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRTKGSWST EEDEALRRLV ERHGPRNWTL IGRSIPGRSG KSCRLRWCNQ LSPQVEHRPF TPEEDETIIR AHRRFGNKWA TIARLLSGRT DNAIKNHWNS
101: TLRRRCAPSV PAASVVDREG ETTAQPPKSP AGSELSDSSQ HSAATATHVD RPVPITGDIR VRPSPSSSYP TSQQHDLRLE AQSSVAEDDL LTSLTLSLPG
201: SDRIGASNRH HTSSEHQLEA LPPTWRSENP GDDRARHPPF QFSAELLAVM QDMIRSEVSS YMSARSRSGG DHSRPALERI GLVKDRLD
101: TLRRRCAPSV PAASVVDREG ETTAQPPKSP AGSELSDSSQ HSAATATHVD RPVPITGDIR VRPSPSSSYP TSQQHDLRLE AQSSVAEDDL LTSLTLSLPG
201: SDRIGASNRH HTSSEHQLEA LPPTWRSENP GDDRARHPPF QFSAELLAVM QDMIRSEVSS YMSARSRSGG DHSRPALERI GLVKDRLD
001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
Arabidopsis Description
MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.