Factsheet for GSMUA_Achr8P25220_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P19900_001
GSMUA_Achr3P10240_001
GSMUA_Achr6P07390_001
GSMUA_Achr6P12780_001
GSMUA_Achr6P29070_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001
GSMUA_Achr9P08310_001
GSMUA_Achr9P18170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50060.1	GSMUA_Achr10P...	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr6P07390_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr6P12780_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr6P29070_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr9P08310_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr3P10240_001	AT5G20730.1	17675404
AT3G50060.1	GSMUA_Achr9P18170_001	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P12950_001	Banana	nucleus	54.05	60.15
GSMUA_Achr4P20150_001	Banana	nucleus	51.01	56.13
GSMUA_Achr1P09750_001	Banana	nucleus	53.38	53.2
GSMUA_Achr4P09450_001	Banana	nucleus	54.05	52.98
GSMUA_Achr1P26140_001	Banana	nucleus	50.0	52.48
KRH61351	Soybean	nucleus	45.61	52.12
GSMUA_Achr9P22600_001	Banana	nucleus	50.0	51.39
GSMUA_Achr3P13070_001	Banana	nucleus	50.34	51.38
CDY12830	Canola	nucleus	43.24	50.59
CDY01420	Canola	nucleus	43.24	48.67
GSMUA_AchrUn_...	Banana	nucleus	45.95	48.06
GSMUA_Achr3P28230_001	Banana	nucleus	46.62	47.92
KRH05621	Soybean	nucleus	43.24	47.76
Zm00001d005300_P001	Maize	nucleus	45.27	47.02
Os09t0106700-01	Rice	nucleus	48.99	45.45
KRH15420	Soybean	nucleus	41.89	45.42
Bra012149.1-P	Field mustard	nucleus	44.59	44.59
TraesCS5B01G157300.1	Wheat	nucleus	50.34	44.48
TraesCS5A01G159600.1	Wheat	nucleus	50.34	44.35
AT5G67300.1	Thale cress	nucleus	44.93	43.61
TraesCS5D01G164600.1	Wheat	nucleus	50.34	43.44
Zm00001d019712_P001	Maize	nucleus	50.0	42.9
CDY57355	Canola	nucleus	40.2	42.81
Bra012910.1-P	Field mustard	nucleus	41.89	42.32
CDY30608	Canola	nucleus	37.84	42.26
VIT_03s0180g00210.t01	Wine grape	nucleus	43.24	42.24
Bra036048.1-P	Field mustard	nucleus	37.84	42.11
CDY23023	Canola	nucleus	41.22	42.07
CDY02098	Canola	nucleus	41.55	41.98
AT3G50060.1	Thale cress	nucleus	42.57	41.86
EER98550	Sorghum	nucleus	50.0	40.44
Bra029990.1-P	Field mustard	nucleus	38.85	39.12
GSMUA_Achr3P16490_001	Banana	nucleus	20.61	36.31
HORVU5Hr1G049880.1	Barley	plastid	49.66	34.67
CDX68566	Canola	nucleus	36.15	34.08
GSMUA_Achr6P33470_001	Banana	nucleus	25.34	33.33
GSMUA_Achr11P...	Banana	nucleus	18.58	30.05
GSMUA_Achr3P07700_001	Banana	nucleus	20.61	29.76
GSMUA_Achr9P29090_001	Banana	nucleus	20.95	29.52
GSMUA_Achr9P15750_001	Banana	nucleus	20.27	28.44
GSMUA_Achr9P03720_001	Banana	nucleus	30.74	28.26
GSMUA_Achr6P17630_001	Banana	nucleus	24.32	27.38
GSMUA_Achr9P08480_001	Banana	nucleus	22.97	26.56
GSMUA_Achr10P...	Banana	nucleus	22.64	25.77
GSMUA_Achr3P18970_001	Banana	nucleus	21.96	24.81
GSMUA_Achr5P27750_001	Banana	nucleus	20.95	24.6
GSMUA_Achr6P15900_001	Banana	nucleus	22.64	24.36
GSMUA_Achr9P04990_001	Banana	nucleus	24.32	23.84
GSMUA_Achr11P...	Banana	nucleus	20.95	22.55
GSMUA_Achr6P32250_001	Banana	nucleus	26.35	22.54
GSMUA_Achr10P...	Banana	nucleus	23.99	22.12
GSMUA_Achr10P...	Banana	nucleus	22.64	22.04
GSMUA_Achr5P28780_001	Banana	nucleus	29.05	21.66
GSMUA_Achr5P23290_001	Banana	nucleus	21.28	20.86
GSMUA_Achr3P09490_001	Banana	nucleus	22.3	20.69
GSMUA_Achr9P17000_001	Banana	nucleus	20.95	20.39
GSMUA_Achr6P02580_001	Banana	nucleus	23.65	19.77
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	23.99	18.02
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	22.97	14.47

Protein Annotations

EnsemblPlants:GSMUA_Achr8P25220_001	EnsemblPlants:GSMUA_Achr8T25220_001	EnsemblPlantsGene:GSMUA_Achr8G25220_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF940	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002959728	UniProt:M0TTH5	MapMan:15.5.2.1	:	:	:

Description

Putative Transcription factor MYB44 [Source:GMGC_GENE;Acc:GSMUA_Achr8G25220_001]

Coordinates

chr8:+:29114006..29115668

Molecular Weight (calculated)

32820.6 Da

IEP (calculated)

9.975

GRAVY (calculated)

-0.689

Length

296 amino acids

Sequence
(BLAST)

001: MGSRKDVDRI TGPWSQEEDE ALQSLVQRHG PRNWSLISKS IPGRSGKSCR LRWCNQLSPQ VEHRHFTAEE DEIIVRAHRR FGNKWATIAR LLSGRTDNAI
101: KNHWNSTLKR KYSTACPVDN ELRHRPLKRA SSDGLTLFHH SHSLISPPAA ASHIHQPFPR TGGVVTLSFS PSQHHHHGGP ITAAADPTSL KNDDGPTTFL
201: TLSLPGSDQI HTSSHRHRCS ATAASPSGRA RIPNADDERR SAPFSFSGEF MAVMQEMIRS EVRSYMVELE QGRMVCGTQP PPCNAAAKRV GVTDAE

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.