Factsheet for GSMUA_Achr9P04990_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32250_001	Banana	nucleus	73.84	64.45
GSMUA_Achr11P...	Banana	nucleus	37.09	61.2
GSMUA_Achr10P...	Banana	nucleus	62.58	58.88
GSMUA_Achr6P15900_001	Banana	nucleus	52.65	57.82
GSMUA_Achr10P...	Banana	nucleus	55.96	55.59
Os01t0274800-01	Rice	nucleus	45.7	52.08
GSMUA_Achr3P16490_001	Banana	nucleus	28.81	51.79
GSMUA_Achr3P09490_001	Banana	nucleus	54.64	51.72
GSMUA_Achr9P17000_001	Banana	nucleus	50.0	49.67
GSMUA_Achr3P07700_001	Banana	nucleus	32.12	47.32
GSMUA_Achr9P29090_001	Banana	nucleus	32.78	47.14
Bra039036.1-P	Field mustard	nucleus	29.8	46.63
Zm00001d008251_P002	Maize	nucleus	45.7	46.15
GSMUA_Achr5P27750_001	Banana	nucleus	38.41	46.03
Zm00001d040423_P001	Maize	nucleus	45.03	45.64
EES02758	Sorghum	nucleus	45.7	45.54
GSMUA_Achr9P15750_001	Banana	nucleus	31.46	45.02
EES02759	Sorghum	nucleus	41.72	44.68
Zm00001d040426_P001	Maize	nucleus	39.74	43.17
TraesCS3B01G217100.1	Wheat	nucleus	44.7	43.13
GSMUA_Achr6P17630_001	Banana	nucleus	37.09	42.59
TraesCS3D01G191400.1	Wheat	nucleus	44.7	42.06
TraesCS3A01G187800.1	Wheat	nucleus	45.03	41.85
AT5G39700.1	Thale cress	nucleus	26.16	41.58
HORVU3Hr1G038700.2	Barley	nucleus	45.36	41.52
GSMUA_Achr9P08480_001	Banana	nucleus	34.11	40.23
GSMUA_Achr3P18970_001	Banana	nucleus	34.77	40.08
GSMUA_Achr11P...	Banana	nucleus	35.76	39.27
GSMUA_Achr10P...	Banana	nucleus	33.77	39.23
Bra025652.1-P	Field mustard	nucleus	31.46	36.68
CDY44415	Canola	nucleus	31.46	36.4
CDY30264	Canola	nucleus	31.13	36.15
CDY67808	Canola	nucleus	18.87	35.85
GSMUA_Achr5P23290_001	Banana	nucleus	34.77	34.77
CDY20004	Canola	nucleus	32.78	34.49
CDY66025	Canola	nucleus	32.12	33.68
GSMUA_Achr6P02580_001	Banana	nucleus	39.4	33.62
Bra033078.1-P	Field mustard	nucleus	31.46	33.22
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	42.38	32.49
AT3G29020.2	Thale cress	nucleus	32.45	32.13
CDY66170	Canola	nucleus	32.45	31.21
GSMUA_Achr6P33470_001	Banana	nucleus	20.2	27.11
GSMUA_Achr4P12950_001	Banana	nucleus	23.84	27.07
GSMUA_Achr4P20150_001	Banana	nucleus	23.84	26.77
CDX74436	Canola	nucleus	31.46	26.32
GSMUA_Achr1P26140_001	Banana	nucleus	23.84	25.53
GSMUA_Achr9P22600_001	Banana	nucleus	23.84	25.0
GSMUA_Achr1P09750_001	Banana	nucleus	24.17	24.58
GSMUA_Achr3P13070_001	Banana	nucleus	23.51	24.48
GSMUA_Achr8P25220_001	Banana	nucleus	23.84	24.32
GSMUA_Achr3P28230_001	Banana	nucleus	22.52	23.61
GSMUA_Achr4P09450_001	Banana	nucleus	23.51	23.51
GSMUA_AchrUn_...	Banana	nucleus	21.85	23.32
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	35.43	22.77
GSMUA_Achr9P03720_001	Banana	nucleus	22.52	21.12
GSMUA_Achr5P28780_001	Banana	nucleus	22.85	17.38

Protein Annotations

EnsemblPlants:GSMUA_Achr9P04990_001	EnsemblPlants:GSMUA_Achr9T04990_001	EnsemblPlantsGene:GSMUA_Achr9G04990_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF697	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000296BD42	UniProt:M0TXK8	MapMan:15.5.2.1	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G04990_001]

Coordinates

chr9:-:3240064..3241660

Molecular Weight (calculated)

32785.3 Da

IEP (calculated)

8.157

GRAVY (calculated)

-0.619

Length

302 amino acids

Sequence
(BLAST)

001: MGFFPPVASP FPAVAGGDDK SNSQGGEEEG GDGSPHGNEQ QHRLCARGHW RPAEDAKLKE LVSQFGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPKINRN
101: AFSEVEEERL LAAHRLYGNK WALIARLFPG RTDNAVKNHW HVIMARKQRE QSNAYRRSRR PSVSPSCALL PQPLPNNNNN NNACSGESTI TSTRDESAST
201: GADLSLSSFT SRIVPSVPDG HIPSQILLNG KRCVGRFGDS GGGFSPRVPR MLLPGVVDEP GCTGSASEEV SVAYHMSNDL PRGETTHGSG LTFIDFLGVG
301: AT

Best Arabidopsis Sequence Match ( AT1G69560.1 )
(BLAST)

001: MEMVHADVAS LSITPCFPSS LSSSSHHHYN QQQHCIMSED QHHSMDQTTS SDYFSLNIDN AQHLRSYYTS HREEDMNPNL SDYSNCNKKD TTVYRSCGHS
101: SKASVSRGHW RPAEDTKLKE LVAVYGPQNW NLIAEKLQGR SGKSCRLRWF NQLDPRINRR AFTEEEEERL MQAHRLYGNK WAMIARLFPG RTDNSVKNHW
201: HVIMARKFRE QSSSYRRRKT MVSLKPLINP NPHIFNDFDP TRLALTHLAS SDHKQLMLPV PCFPGYDHEN ESPLMVDMFE TQMMVGDYIA WTQEATTFDF
301: LNQTGKSEIF ERINEEKKPP FFDFLGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.