Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G217100.1 | Wheat | nucleus | 93.54 | 97.12 |
| TraesCS3D01G191400.1 | Wheat | nucleus | 94.77 | 95.95 |
| HORVU3Hr1G038700.2 | Barley | nucleus | 90.15 | 88.79 |
| Os01t0274800-01 | Rice | nucleus | 57.23 | 70.19 |
| EES02758 | Sorghum | nucleus | 62.15 | 66.67 |
| Zm00001d008251_P002 | Maize | nucleus | 60.92 | 66.22 |
| Zm00001d040423_P001 | Maize | nucleus | 60.31 | 65.77 |
| EES02759 | Sorghum | nucleus | 50.46 | 58.16 |
| GSMUA_Achr6P15900_001 | Banana | nucleus | 40.0 | 47.27 |
| Zm00001d040426_P001 | Maize | nucleus | 39.69 | 46.4 |
| Bra039036.1-P | Field mustard | nucleus | 27.38 | 46.11 |
| GSMUA_Achr9P04990_001 | Banana | nucleus | 41.85 | 45.03 |
| GSMUA_Achr9P17000_001 | Banana | nucleus | 40.92 | 43.75 |
| GSMUA_Achr5P27750_001 | Banana | nucleus | 33.85 | 43.65 |
| GSMUA_Achr10P... | Banana | nucleus | 40.62 | 43.42 |
| GSMUA_Achr3P09490_001 | Banana | nucleus | 40.92 | 41.69 |
| GSMUA_Achr10P... | Banana | nucleus | 40.92 | 41.43 |
| TraesCS4A01G211100.1 | Wheat | nucleus | 33.85 | 39.86 |
| GSMUA_Achr6P32250_001 | Banana | nucleus | 42.15 | 39.6 |
| AT5G39700.1 | Thale cress | nucleus | 23.08 | 39.47 |
| CDY44415 | Canola | nucleus | 31.08 | 38.7 |
| Bra025652.1-P | Field mustard | nucleus | 29.85 | 37.45 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 31.08 | 36.59 |
| CDY30264 | Canola | nucleus | 28.62 | 35.77 |
| CDY20004 | Canola | nucleus | 31.38 | 35.54 |
| Bra033078.1-P | Field mustard | nucleus | 31.08 | 35.31 |
| CDY66025 | Canola | nucleus | 30.77 | 34.72 |
| CDY67808 | Canola | nucleus | 16.92 | 34.59 |
| TraesCS3A01G439500.1 | Wheat | nucleus | 36.92 | 33.9 |
| AT3G29020.2 | Thale cress | nucleus | 31.38 | 33.44 |
| CDY66170 | Canola | nucleus | 31.08 | 32.17 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 36.31 | 29.95 |
| TraesCS4A01G047900.1 | Wheat | nucleus | 16.92 | 28.95 |
| CDX74436 | Canola | nucleus | 29.54 | 26.59 |
| TraesCS7A01G526500.1 | Wheat | nucleus | 23.69 | 25.93 |
| TraesCS7A01G526600.1 | Wheat | nucleus | 23.08 | 25.77 |
| TraesCS6A01G173800.1 | Wheat | nucleus | 23.38 | 25.5 |
| TraesCS4A01G006100.1 | Wheat | nucleus | 20.92 | 24.91 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 24.0 | 23.21 |
| TraesCS1A01G223600.1 | Wheat | nucleus | 19.08 | 18.73 |
| TraesCS3A01G365200.1 | Wheat | nucleus | 23.38 | 16.45 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G187800.1 | EnsemblPlantsGene:TraesCS3A01G187800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF473 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:225893666..225895116
Molecular Weight (calculated)
35587.3 Da
IEP (calculated)
8.363
GRAVY (calculated)
-0.708
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREMNGFFS HPPTPPPAPY PQEEAAADVD DAEDGGGGQG KLCSRGHWRP AEDARLKELV GQYGPQNWNL IAEKLDGRSG KSCRLRWFNQ LDPRINRRAF
101: TEEEEDRLMA AHRAYGNKWA LIARLFPGRT DNAVKNHWHV LMARRQREQS GAFRRRSKPA SSSSSSIAPA PHHPAPAVVL QHQHQHQHLY QHHGASPIPM
201: PLQPFAMGVA IATGVYSKAA TATATASRAY SGGESDESAS TCTTDLSLSS GSAAVPCFYH HQGYDMAPLA HAVTQAFSPS ARSAFSAPSS SSARQQQRRQ
301: QQQHEEEDGD KLSLPFFDFL GVGST
101: TEEEEDRLMA AHRAYGNKWA LIARLFPGRT DNAVKNHWHV LMARRQREQS GAFRRRSKPA SSSSSSIAPA PHHPAPAVVL QHQHQHQHLY QHHGASPIPM
201: PLQPFAMGVA IATGVYSKAA TATATASRAY SGGESDESAS TCTTDLSLSS GSAAVPCFYH HQGYDMAPLA HAVTQAFSPS ARSAFSAPSS SSARQQQRRQ
301: QQQHEEEDGD KLSLPFFDFL GVGST
001: MNPNLLEKDL RGKETTNGSI RYKEANNFRS LPNSHTAACK TSLNNPSISR NHPHNKSASV LESEDEHGNE RGENEKSLRM RGKSGINTKV CSRGHWRPTE
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
Arabidopsis Description
MYB56Transcription factor MYB56 [Source:UniProtKB/Swiss-Prot;Acc:Q6R053]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.