Factsheet for TraesCS6A01G173800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G162900.1	Wheat	nucleus	97.99	98.32
TraesCS6B01G201700.1	Wheat	nucleus	96.31	97.95
HORVU6Hr1G035470.1	Barley	nucleus	96.98	97.64
Zm00001d015614_P001	Maize	nucleus	84.23	82.57
Os02t0187700-00	Rice	nucleus	81.54	80.73
EES04668	Sorghum	nucleus	84.9	77.37
TraesCS7A01G526600.1	Wheat	nucleus	65.1	66.67
TraesCS7A01G526500.1	Wheat	nucleus	64.43	64.65
CDX83109	Canola	nucleus	26.85	49.38
TraesCS5A01G159600.1	Wheat	nucleus	48.99	43.45
CDY43567	Canola	nucleus	30.87	42.4
TraesCS4A01G047900.1	Wheat	nucleus	24.5	38.42
TraesCS4A01G006100.1	Wheat	nucleus	31.54	34.43
TraesCS1A01G223600.1	Wheat	nucleus	34.23	30.82
TraesCS4A01G211100.1	Wheat	nucleus	22.48	24.28
TraesCS4A01G262500.3	Wheat	nucleus	22.15	23.91
TraesCS3A01G187800.1	Wheat	nucleus	25.5	23.38
TraesCS3A01G365200.1	Wheat	nucleus	29.87	19.26
TraesCS3A01G439500.1	Wheat	nucleus	21.48	18.08
CDX83108	Canola	cytosol	2.01	15.38

Protein Annotations

EnsemblPlants:TraesCS6A01G173800.1	EnsemblPlantsGene:TraesCS6A01G173800	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF926	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:187271425..187272321

Molecular Weight (calculated)

31864.5 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.605

Length

298 amino acids

Sequence
(BLAST)

001: MGAEAKCDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ VERRPFTAEE DAAILRAHAR LGNRWAAIAR LLPGRTDNAV
101: KNHWNSSLKR KLATATGGGA AWEEASDSGD SPRPCKRASP GPESPTGSDR SELSHGSGQV FRPVPRPGGF DAISADVRPP PPRQDEDPIT SLSLSLPGLE
201: HGFHHDSARS HFQELSPSPR SPSPPPAPAP QPSSSYPFSG DLVAAMQEMI RAEVCKYMSG VGLPAGCGAG AVGEACIPQL VEGVMRAAAE RVGVMTRQ

Best Arabidopsis Sequence Match ( AT5G67300.1 )
(BLAST)

001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE

Arabidopsis Description

MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.